RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-215	ENST00000525241	TWSG1	Q9GZX9	223 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	G6PC2	Q9NQR9	355 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	RCE1	Q9Y256	329 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	BTBD3	Q9Y2F9	522 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	PCDHGB3	Q9Y5G1	929 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	ZNF804B	A4D1E1	1349 aa		4.89	□□□□□ -1.63
CD44-215	ENST00000525241	DNAJC9-AS1	A6NH13	148 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241		B9A039	149 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241		E7EVH7	732 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ALDOC	P09972	364 aa	Known RBP	4.88	□□□□□ -1.63
CD44-215	ENST00000525241	TGM2	P21980	687 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	HOXD9	P28356	352 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-215	ENST00000525241	RCAN1	P53805	252 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	DHX8	Q14562	1220 aa	Known RBP	4.88	□□□□□ -1.63
CD44-215	ENST00000525241	TAF5	Q15542	800 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	MORN5	Q5VZ52	161 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	LDHAL6A	Q6ZMR3	332 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ANKRD42	Q8N9B4	389 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ADPRHL1	Q8NDY3	354 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	BCAS4	Q8TDM0	211 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ZFPM2	Q8WW38	1151 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	THAP4	Q8WY91	577 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ATP2A3	Q93084	1043 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	RILPL2	Q969X0	211 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	SDCCAG3	Q96C92	435 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	PSMD1	Q99460	953 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	FAM167B	Q9BTA0	163 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ISCA1	Q9BUE6	129 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	HTATIP2	Q9BUP3	242 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ARHGAP39	Q9C0H5	1083 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ERVK-5	Q9HDB9	667 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	NRIP3	Q9NQ35	241 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	ITM2C	Q9NQX7	267 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	KIF17	Q9P2E2	1029 aa		4.88	□□□□□ -1.63
CD44-215	ENST00000525241	EIF3J	O75822	258 aa	Known RBP	4.87	□□□□□ -1.63
CD44-215	ENST00000525241	CD63	P08962	238 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	CTSA	P10619	480 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	ARL4C	P56559	192 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	STIM1	Q13586	685 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	SLC9C1	Q4G0N8	1177 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241		Q4G0T1	1027 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	DEF8	Q6ZN54	512 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	RTL10	Q7L3V2	364 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	SYT13	Q7L8C5	426 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	SMC5	Q8IY18	1101 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	ARL14EP	Q8N8R7	260 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-215	ENST00000525241	OR52N4	Q8NGI2	321 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	SPPL3	Q8TCT6	385 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-215	ENST00000525241	MOV10	Q9HCE1	1003 aa	Known RBP	4.87	□□□□□ -1.63
CD44-215	ENST00000525241	TXNRD2	Q9NNW7	524 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	MTMR4	Q9NYA4	1195 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	BAG5	Q9UL15	447 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	GPR52	Q9Y2T5	361 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	LMTK3	Q96Q04	1460 aa		4.87	□□□□□ -1.63
CD44-215	ENST00000525241	WDR91	A4D1P6	747 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	GRM8	O00222	908 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	ADAM10	O14672	748 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	USP12	O75317	370 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	KRT38	O76015	456 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	TFRC	P02786	760 aa	Known RBP	4.86	□□□□□ -1.63
CD44-215	ENST00000525241	TFEB	P19484	476 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	PCP4	P48539	62 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	SLC12A2	P55011	1212 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	RPS13	P62277	151 aa	Known RBP	4.86	□□□□□ -1.63
CD44-215	ENST00000525241	B4GALNT1	Q00973	533 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	ZNF91	Q05481	1191 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	PDCL	Q13371	301 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	LRRC24	Q50LG9	513 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	LIPM	Q5VYY2	423 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	RASGRP2	Q7LDG7	609 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	MDGA2	Q7Z553	956 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	PAQR4	Q8N4S7	273 aa	Predicted RBP	4.86	□□□□□ -1.63
CD44-215	ENST00000525241	KAT2B	Q92831	832 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	COQ8B	Q96D53	544 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	PIGS	Q96S52	555 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	SCNM1	Q9BWG6	230 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	PDE11A	Q9HCR9	933 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	TMEM184C	Q9NVA4	438 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	TMLHE	Q9NVH6	421 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
CD44-215	ENST00000525241	PI4KB	Q9UBF8	816 aa		4.86	□□□□□ -1.63
CD44-215	ENST00000525241	HNRNPR	O43390	633 aa	Known RBP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	TLR2	O60603	784 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	CNOT3	O75175	753 aa	Known RBP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	TOP3B	O95985	862 aa	Known RBP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	TK1	P04183	234 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	CHN1	P15882	459 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	CPA2	P48052	419 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	AARS	P49588	968 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	ADPRH	P54922	357 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	CDK18	Q07002	472 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	KLF9	Q13886	244 aa	Predicted RBP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	PGM5	Q15124	567 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	TRIP6	Q15654	476 aa	Known RBP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	RFX8	Q6ZV50	586 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	FAM57B	Q71RH2	274 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	HERC6	Q8IVU3	1022 aa		4.85	□□□□□ -1.63
CD44-215	ENST00000525241	FTSJ3	Q8IY81	847 aa	Known RBP	4.85	□□□□□ -1.63
CD44-215	ENST00000525241	PTGR2	Q8N8N7	351 aa	Predicted RBP	4.85	□□□□□ -1.63

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