RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CELF3Q5SZQ8 465 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 SH3BP5LQ7L8J4 393 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 TNS4Q8IZW8 715 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 ZNF184Q99676 751 aaPredicted RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 CPNE1Q99829 537 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 B3GNT5Q9BYG0 378 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 POPDC2Q9HBU9 364 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 PDGFCQ9NRA1 345 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 COL20A1Q9P218 1284 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 OR12D3Q9UGF7 316 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 AJAP1Q9UKB5 411 aaPredicted RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 EDF1O60869 148 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 RAMP2O60895 175 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 LYPLA2O95372 231 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SERPINB10P48595 397 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 PTDSS1P48651 473 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 ALDH7A1P49419 539 aaKnown RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 BEX3Q00994 111 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SPANXN3Q5MJ09 141 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 DNAJC14Q6Y2X3 702 aaPredicted RBP12.95□□□□□ -0.34
USP53-209ENST00000514665 MARK4Q96L34 752 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 CPXM1Q96SM3 734 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 CDHR5Q9HBB8 845 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 SYTL2Q9HCH5 934 aa12.95□□□□□ -0.34
USP53-209ENST00000514665 DISP2A7MBM2 1401 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 MRASO14807 208 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 FECHP22830 423 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 NOS2P35228 1153 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 FASTKQ14296 549 aaKnown RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 PARP6Q2NL67 630 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 TTLL9Q3SXZ7 439 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 MOB2Q70IA6 237 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 TMEM79Q9BSE2 394 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 CLPBQ9H078 707 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 RGS18Q9NS28 235 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 SMPD4Q9NXE4 827 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 VPS28Q9UK41 221 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 TRHDEQ9UKU6 1024 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 PLA2G4CQ9UP65 541 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 CACNA1FO60840 1977 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 YDJCA8MPS7 323 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 KDM1AO60341 852 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 APOA1P02647 267 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 ATP6V1B2P21281 511 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 NPY2RP49146 381 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 NEPROQ6NW34 567 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 HORMAD1Q86X24 394 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 CERS2Q96G23 380 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 TMEM169Q96HH4 297 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 COPS7BQ9H9Q2 264 aaPredicted RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 MID1IP1Q9NPA3 183 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 GEMIN8Q9NWZ8 242 aaKnown RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 E7ENQ6 273 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 ZNF862O60290 1169 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 KATNA1O75449 491 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 PARNO95453 639 aaKnown RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 PTPN1P18031 435 aaKnown RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 OR1E1P30953 314 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 CLK2P49760 499 aaKnown RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 ST8SIA6P61647 398 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 SLC1A5Q15758 541 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 GPR141Q7Z602 305 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 TLK2Q86UE8 772 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 OR6Y1Q8NGX8 325 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 EBNA1BP2Q99848 306 aaKnown RBP12.94□□□□□ -0.34
USP53-209ENST00000514665 MTFR1LQ9H019 292 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 VTA1Q9NP79 307 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 NDUFA13Q9P0J0 144 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 CROTQ9UKG9 612 aa12.94□□□□□ -0.34
USP53-209ENST00000514665 DEAF1O75398 565 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 TBX4P57082 545 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 JAM2P57087 298 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 RIOX2Q8IUF8 465 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 VPS37AQ8NEZ2 397 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 ACOX2Q99424 681 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 OMDQ99983 421 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 COLEC11Q9BWP8 271 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 OSBPL7Q9BZF2 842 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 DMAP1Q9NPF5 467 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 EIF3LQ9Y262 564 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 PCDHB7Q9Y5E2 793 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 NFASCO94856 1347 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 PEX1O43933 1283 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 NPM3O75607 178 aaKnown RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 RHOCP08134 193 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 UBE3AQ05086 875 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 LRRC8BQ6P9F7 803 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 CMC1Q7Z7K0 106 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 RNF180Q86T96 592 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 SLC44A2Q8IWA5 706 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 LPCAT1Q8NF37 534 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 SMARCD1Q96GM5 515 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 ZNF556Q9HAH1 456 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 GBA2Q9HCG7 927 aaPredicted RBP12.93□□□□□ -0.34
USP53-209ENST00000514665 TBC1D13Q9NVG8 400 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 PPP2R3BQ9Y5P8 575 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 RICTORQ6R327 1708 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 FER1L4A9Z1Z3 1794 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 HACD1B0YJ81 288 aa12.93□□□□□ -0.34
USP53-209ENST00000514665 DNM1LO00429 736 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms