RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 SNX16P57768 344 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 DAOAP59103 153 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 KDSRQ06136 332 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 PDE1CQ14123 709 aaPredicted RBP12.79□□□□□ -0.36
HMGN1-220ENST00000492280 UBAP2LQ14157 1087 aaKnown RBP12.79□□□□□ -0.36
HMGN1-220ENST00000492280 TIGD5Q53EQ6 642 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 CERCAMQ5T4B2 595 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 PACS1Q6VY07 963 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 TNS4Q8IZW8 715 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 MFSD3Q96ES6 412 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 ZNF778Q96MU6 729 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 XAB2Q9HCS7 855 aaKnown RBP12.79□□□□□ -0.36
HMGN1-220ENST00000492280 TMLHEQ9NVH6 421 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 STAP1Q9ULZ2 295 aa12.79□□□□□ -0.36
HMGN1-220ENST00000492280 ARL5CA6NH57 179 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 H3BRJ5 948 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ZBTB24O43167 697 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 MSI1O43347 362 aaKnown RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 XPOTO43592 962 aaKnown RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 MGEA5O60502 916 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 TSHRP16473 764 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ZFXP17010 805 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ARRB2P32121 409 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 NR2C2P49116 596 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 RPL34P49207 117 aaKnown RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 CPT1AP50416 773 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ZNF157P51786 506 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 RIPK1Q13546 671 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 DPYSQ14117 519 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 TEX44Q53QW1 395 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 XKR4Q5GH76 650 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 DNAAF3Q8N9W5 541 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 PPP1R14CQ8TAE6 165 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 MYLPFQ96A32 169 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 CLPTM1LQ96KA5 538 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 MOCS1Q9NZB8 636 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 DCLK1O15075 740 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 CHRNA1P02708 482 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 OR4Q2P0C623 313 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 PTPN3P26045 913 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 CD52P31358 61 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ADRA1BP35368 520 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 SKIV2L2P42285 1042 aaKnown RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 IRF9Q00978 393 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 PDE1BQ01064 536 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 FASTKD1Q53R41 847 aaKnown RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 VWA5B1Q5TIE3 1220 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 AGMOQ6ZNB7 445 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 RSPH3Q86UC2 560 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 TOP6BLQ8N6T0 577 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ATP2A3Q93084 1043 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ZNF419Q96HQ0 510 aaPredicted RBP12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ZNF570Q96NI8 536 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 TKTL2Q9H0I9 626 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 ZFATQ9P243 1243 aa12.78□□□□□ -0.36
HMGN1-220ENST00000492280 SDR42E2A6NKP2 422 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 TNPO2O14787 897 aaKnown RBP12.77□□□□□ -0.36
HMGN1-220ENST00000492280 B3GAT3O94766 335 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 UPP2O95045 317 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 NFKB1P19838 968 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 CCNFP41002 786 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 PEX6Q13608 980 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 EML3Q32P44 896 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 SDHAF4Q5VUM1 108 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 FAM219BQ5XKK7 198 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 RWDD4Q6NW29 188 aaKnown RBP12.77□□□□□ -0.36
HMGN1-220ENST00000492280 OTOP3Q7RTS5 596 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 LIMS2Q7Z4I7 341 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 PLD6Q8N2A8 252 aaKnown RBP12.77□□□□□ -0.36
HMGN1-220ENST00000492280 DTX3LQ8TDB6 740 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 PPP1R36Q96LQ0 422 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 NUDCD1Q96RS6 583 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 ZIC5Q96T25 663 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 ZNF180Q9UJW8 692 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 C15orf41Q9Y2V0 281 aa12.77□□□□□ -0.36
HMGN1-220ENST00000492280 GABRDO14764 452 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 GSRP00390 522 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 THP07101 528 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 ITGA2BP08514 1039 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 AXLP30530 894 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 CD68P34810 354 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 MRPS6P82932 125 aaKnown RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 OCRLQ01968 901 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 CACNB2Q08289 660 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 NIPAL4Q0D2K0 466 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 HSP90AA5PQ58FG0 334 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 TAC4Q86UU9 113 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 WDR60Q8WVS4 1066 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 RNF34Q969K3 372 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 NT5C3BQ969T7 300 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 PTCD3Q96EY7 689 aaKnown RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 RILPQ96NA2 401 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 SLC2A13Q96QE2 648 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 RAB3IPQ96QF0 476 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 RTP3Q9BQQ7 232 aa12.77□□□□□ -0.37
HMGN1-220ENST00000492280 MLPHQ9BV36 600 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.77□□□□□ -0.37
HMGN1-220ENST00000492280 TRDMT1O14717 391 aaKnown RBP12.76□□□□□ -0.37
HMGN1-220ENST00000492280 LRIG2O94898 1065 aa12.76□□□□□ -0.37
HMGN1-220ENST00000492280 LTFP02788 710 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms