RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 RNF25Q96BH1 459 aaPredicted RBP14.32□□□□□ -0.12
C9orf3-221ENST00000489562 TMA16Q96EY4 203 aaKnown RBP14.32□□□□□ -0.12
C9orf3-221ENST00000489562 CSPG4P5Q96PW8 444 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 SPHK2Q9NRA0 654 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 CWC15Q9P013 229 aaKnown RBP14.32□□□□□ -0.12
C9orf3-221ENST00000489562 SNX10Q9Y5X0 201 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 MIA3Q5JRA6 1907 aa14.32□□□□□ -0.12
C9orf3-221ENST00000489562 A0A1B0GVM2 712 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 TCAF2A6NFQ2 919 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 WASH4PA8MWX3 477 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 PI4K2BG5E9Z4 385 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 SCAMP3O14828 347 aaKnown RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 CLDN11O75508 207 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 PYGMP11217 842 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 ZFXP17010 805 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 RHOQP17081 205 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 GDI1P31150 447 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 CDKN2BP42772 138 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 CDH4P55283 916 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 NR1H3Q13133 447 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 DPYSQ14117 519 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 GRM2Q14416 872 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 ANKRD20A8PQ5CZ79 823 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 DCAF12L1Q5VU92 463 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 RWDD4Q6NW29 188 aaKnown RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 MFSD7Q6UXD7 560 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 C14orf80Q86SX3 495 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 CCDC117Q8IWD4 279 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 CPA6Q8N4T0 437 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 DDI1Q8WTU0 396 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 IGSF8Q969P0 613 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 PRICKLE1Q96MT3 831 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 RNF157Q96PX1 679 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 OSBPL9Q96SU4 736 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 MAK16Q9BXY0 300 aaKnown RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 MAGEB5Q9BZ81 275 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 PLA2G2FQ9BZM2 168 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 LINC00597Q9H2U6 94 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 KCNK12Q9HB15 430 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 ARHGEF4Q9NR80 690 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 LIMD1Q9UGP4 676 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 NEU3Q9UQ49 428 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 SAR1BQ9Y6B6 198 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 KIAA1549LQ6ZVL6 1849 aa14.31□□□□□ -0.12
C9orf3-221ENST00000489562 TCF20Q9UGU0 1960 aaKnown RBP14.31□□□□□ -0.12
C9orf3-221ENST00000489562 hCG_1818297A0A087WSY0 165 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 HOXC11O43248 304 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-221ENST00000489562 TBL1XO60907 577 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 PENKP01210 267 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-221ENST00000489562 CYP17A1P05093 508 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 CD48P09326 243 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 IL4RP24394 825 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 SERPINB6P35237 376 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 MAPKAPK2P49137 400 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 VCPP55072 806 aaKnown RBP14.3□□□□□ -0.12
C9orf3-221ENST00000489562 RPS24P62847 133 aaKnown RBP14.3□□□□□ -0.12
C9orf3-221ENST00000489562 GAD2Q05329 585 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 ZP2Q05996 745 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 DHCR24Q15392 516 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 LY6G5CQ5SRR4 150 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 RNF43Q68DV7 783 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 TMCO3Q6UWJ1 677 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 TPGS1Q6ZTW0 290 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 LZTR1Q8N653 840 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 RTL3Q8N8U3 475 aaKnown RBP14.3□□□□□ -0.12
C9orf3-221ENST00000489562 KIF18AQ8NI77 898 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 ASIC4Q96FT7 647 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 NAP1L3Q99457 506 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-221ENST00000489562 BBS2Q9BXC9 721 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 OSBPL8Q9BZF1 889 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 BRD9Q9H8M2 597 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 TRPV5Q9NQA5 729 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 TMEM248Q9NWD8 314 aa14.3□□□□□ -0.12
C9orf3-221ENST00000489562 COL4A2P08572 1712 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.29□□□□□ -0.12
C9orf3-221ENST00000489562 TRDMT1O14717 391 aaKnown RBP14.29□□□□□ -0.12
C9orf3-221ENST00000489562 TSPAN3O60637 253 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 TJP3O95049 919 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 LUC7L3O95232 432 aaKnown RBP14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ADH5P11766 374 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ERCC2P18074 760 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 OXCT1P55809 520 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 MMRN1Q13201 1228 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ZNF177Q13360 481 aaPredicted RBP14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ZNF211Q13398 564 aaPredicted RBP14.29□□□□□ -0.12
C9orf3-221ENST00000489562 RUNX3Q13761 415 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ANO4Q32M45 955 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ITPRIPL2Q3MIP1 535 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ARTNQ5T4W7 220 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 FYB2Q5VWT5 728 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 SLC9A4Q6AI14 798 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 RHBDF2Q6PJF5 856 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 ZNF783Q6ZMS7 281 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 BBS12Q6ZW61 710 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 SETD3Q86TU7 594 aaPredicted RBP14.29□□□□□ -0.12
C9orf3-221ENST00000489562 NLRP14Q86W24 1093 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 TMEM25Q86YD3 366 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 RFX6Q8HWS3 928 aa14.29□□□□□ -0.12
C9orf3-221ENST00000489562 SLC44A3Q8N4M1 653 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms