RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ANXA13	P27216	316 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	KRT9	P35527	623 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	WAS	P42768	502 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	ASPA	P45381	313 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	CTBS	Q01459	385 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	IFRD2	Q12894	506 aa	Predicted RBP	9.15	□□□□□ -0.94
USP4-213	ENST00000488520	TRIM14	Q14142	442 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	DRAP1	Q14919	205 aa	Predicted RBP	9.15	□□□□□ -0.94
USP4-213	ENST00000488520	DHCR24	Q15392	516 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	STIL	Q15468	1287 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	CFAP221	Q4G0U5	840 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	SGO2	Q562F6	1265 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	MDH1B	Q5I0G3	518 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	LYSMD4	Q5XG99	296 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	SPECC1L	Q69YQ0	1117 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	GJB7	Q6PEY0	223 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	SLC23A3	Q6PIS1	610 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	C19orf48	Q6RUI8	117 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	SARM1	Q6SZW1	724 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	LIMS2	Q7Z4I7	341 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	ADGRG2	Q8IZP9	1017 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	HDDC3	Q8N4P3	179 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	NAT16	Q8N8M0	369 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	B3GALNT2	Q8NCR0	500 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	MYCBPAP	Q8TBZ2	947 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	KBTBD7	Q8WVZ9	684 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	MYLPF	Q96A32	169 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	CYFIP2	Q96F07	1278 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	ARHGEF4	Q9NR80	690 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	TRPM5	Q9NZQ8	1165 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	GDF2	Q9UK05	429 aa	Predicted RBP	9.15	□□□□□ -0.94
USP4-213	ENST00000488520	PILRB	Q9UKJ0	227 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	LUC7L2	Q9Y383	392 aa	Known RBP	9.15	□□□□□ -0.94
USP4-213	ENST00000488520	CPQ	Q9Y646	472 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	DOCK9	Q9BZ29	2069 aa		9.15	□□□□□ -0.94
USP4-213	ENST00000488520	FOXN3	O00409	490 aa	Predicted RBP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	ADAM23	O75077	832 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	KAT7	O95251	611 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	MBL2	P11226	248 aa	Predicted RBP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	TCF3	P15923	654 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	MAGEA11	P43364	429 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	KLK7	P49862	253 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	PDE6C	P51160	858 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	SNX16	P57768	344 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	RPL6	Q02878	288 aa	Known RBP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	TNP2	Q05952	138 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	INCA1	Q0VD86	236 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	SEMA3B	Q13214	749 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	DUOXA1	Q1HG43	343 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	EOGT	Q5NDL2	527 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	SFMBT2	Q5VUG0	894 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	FAM171B	Q6P995	826 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	RHBDF2	Q6PJF5	856 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	DENND5B	Q6ZUT9	1274 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	APTX	Q7Z2E3	356 aa	Known RBP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	PIP4P1	Q86T03	277 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	RBBP8NL	Q8NC74	664 aa	Predicted RBP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	FUBP3	Q96I24	572 aa	Known RBP eCLIP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	CAMK1G	Q96NX5	476 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	SDCBP2	Q9H190	292 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	CRTAC1	Q9NQ79	661 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	EHD2	Q9NZN4	543 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	CFAP97	Q9P2B7	532 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	SLC6A14	Q9UN76	642 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	SIK3	Q9Y2K2	1263 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	CEP83	Q9Y592	693 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	ASXL3	Q9C0F0	2248 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	PLXNA2	O75051	1894 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	TDRD6	O60522	2096 aa	Known RBP	9.14	□□□□□ -0.95
USP4-213	ENST00000488520	APC2	O95996	2303 aa		9.14	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF840P	A6NDX5	716 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520		F8VP50	259 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	CYP26A1	O43174	497 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	AP5Z1	O43299	807 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	THAP12	O43422	761 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	OIP5	O43482	229 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	OPHN1	O60890	802 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	FAM200B	P0CF97	657 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ADH5	P11766	374 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	FER	P16591	822 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ADORA2B	P29275	332 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	GNA15	P30679	374 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	RDX	P35241	583 aa	Known RBP	9.13	□□□□□ -0.95
USP4-213	ENST00000488520	SOX5	P35711	763 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	KIR2DL1	P43626	348 aa	Predicted RBP	9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF75D	P51815	510 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	RAD23B	P54727	409 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	APBA1	Q02410	837 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ARID5A	Q03989	594 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	GFPT1	Q06210	699 aa	Predicted RBP	9.13	□□□□□ -0.95
USP4-213	ENST00000488520	ORC1	Q13415	861 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	CNGA2	Q16280	664 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	LY6G5C	Q5SRR4	150 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	VSTM1	Q6UX27	236 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	TMC6	Q7Z403	805 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	MINDY1	Q8N5J2	469 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	GOLGA6L1	Q8N7Z2	621 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	PNPLA1	Q8N8W4	532 aa		9.13	□□□□□ -0.95
USP4-213	ENST00000488520	SCG3	Q8WXD2	468 aa	Known RBP	9.13	□□□□□ -0.95
USP4-213	ENST00000488520	KAT5	Q92993	513 aa		9.13	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms