RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 EEF1A2Q05639 463 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 POU5F1BQ06416 359 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 DDR1Q08345 913 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 ILF3Q12906 894 aaKnown RBP eCLIP3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 ZNF718Q3SXZ3 478 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 LCE3CQ5T5A8 94 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 LRIG3Q6UXM1 1119 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 SLC16A12Q6ZSM3 486 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 KRT28Q7Z3Y7 464 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 KRCC1Q9NPI7 259 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 TBC1D14Q9P2M4 693 aa3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 DDX20Q9UHI6 824 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 IPO11Q9UI26 975 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-212ENST00000474059 A0A0B4J293 547 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 GAGE12JA6NER3 117 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 NEURL1O76050 574 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 SLC3A2P08195 630 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 ARSBP15848 533 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 CIITAP33076 1130 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 GPS1Q13098 491 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 POLD3Q15054 466 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 TTC39AQ5SRH9 613 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 RNF220Q5VTB9 566 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 CCDC144NLQ6NUI1 221 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 SPSB3Q6PJ21 355 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 WDR75Q8IWA0 830 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 CLIP4Q8N3C7 705 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 PKP4Q99569 1192 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 LRRC27Q9C0I9 530 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 DDX31Q9H8H2 851 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 ZNF287Q9HBT7 754 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 NOB1Q9ULX3 412 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 CKAP5Q14008 2032 aa3.76□□□□□ -1.81
CCDC88A-212ENST00000474059 OR2W5A6NFC9 320 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 KCNQ3O43525 872 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 SOCS5O75159 536 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 CNTN5O94779 1100 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 ITGB8P26012 769 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 TRAF3Q13114 568 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 SEMA3BQ13214 749 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 GLE1Q53GS7 698 aaKnown RBP3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 HSP90AB2PQ58FF8 381 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 ENTPD8Q5MY95 495 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 RRAGBQ5VZM2 374 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 CRTC1Q6UUV9 634 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 C14orf80Q86SX3 495 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 MYO1HQ8N1T3 1032 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 FAM47BQ8NA70 645 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 NEXN-AS1Q8NBZ9 246 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 FAM156AQ8NDB6 213 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 GABPB2Q8TAK5 448 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 TRIM2Q9C040 744 aa3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 HEYLQ9NQ87 328 aaPredicted RBP3.75□□□□□ -1.81
CCDC88A-212ENST00000474059 DPPA5A6NC42 116 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 ANXA2P07355 339 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 U2AF1L5P0DN76 240 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 MMP8P22894 467 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 SLC5A2P31639 672 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 PMS2P54278 862 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 U2AF1Q01081 240 aaKnown RBP eCLIP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 ZNF672Q499Z4 452 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 FAM102BQ5T8I3 360 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 CCDC181Q5TID7 509 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 KIAA0408Q6ZU52 694 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 NOL8Q76FK4 1167 aaKnown RBP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 TCEAL8Q8IYN2 117 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 ADGRF3Q8IZF5 1079 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 CADM3Q8N126 398 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 KDM1BQ8NB78 822 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 ABHD5Q8WTS1 349 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 IPCEF1Q8WWN9 437 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 OVCA2Q8WZ82 227 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 C8orf48Q96LL4 319 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 WDR77Q9BQA1 342 aaPredicted RBP3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 C1QTNF4Q9BXJ3 329 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 CDT1Q9H211 546 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 ZBTB26Q9HCK0 441 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 SDF2L1Q9HCN8 221 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 TXNRD2Q9NNW7 524 aa3.74□□□□□ -1.81
CCDC88A-212ENST00000474059 CXorf65A6NEN9 183 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 CYP1A2P05177 515 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 FCGR1AP12314 374 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 HOXD3P31249 432 aaPredicted RBP3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 KCNJ4P48050 445 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 SLC37A1P57057 533 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 GRSF1Q12849 480 aaKnown RBP eCLIP3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 GPR18Q14330 331 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 GALEQ14376 348 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 SF3B4Q15427 424 aaKnown RBP eCLIP3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 FNBP1LQ5T0N5 605 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 NXNQ6DKJ4 435 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 Q6ZSV7 163 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 SKAP1Q86WV1 359 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 MAGEB6Q8N7X4 407 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 TTC8Q8TAM2 541 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 NPIPB3Q92617 1050 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 C1orf112Q9NSG2 853 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 FZD10Q9ULW2 581 aa3.73□□□□□ -1.81
CCDC88A-212ENST00000474059 GXYLT2A0PJZ3 443 aa3.72□□□□□ -1.81
CCDC88A-212ENST00000474059 GLUD1P00367 558 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms