RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 GLUD2P49448 558 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 LIMK2P53671 638 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TUBA4AP68366 448 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 STX5Q13190 355 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PPIL2Q13356 520 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CDO1Q16878 200 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 HSF5Q4G112 596 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 ZCCHC23Q6ZST2 131 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 C10orf107Q8IVU9 208 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TDRD5Q8NAT2 981 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 CERS2Q96G23 380 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CLMNQ96JQ2 1002 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 OSBPL11Q9BXB4 747 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SLC4A5Q9BY07 1137 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TRIM15Q9C019 465 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 INO80BQ9C086 356 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 ELOVL4Q9GZR5 314 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SNX25Q9H3E2 840 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 MRM3Q9HC36 420 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 PTPRHQ9HD43 1115 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SMYD2Q9NRG4 433 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 IRAK4Q9NWZ3 460 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 IGSF9Q9P2J2 1179 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 ZNF219Q9P2Y4 722 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 CYTH4Q9UIA0 394 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 ADAMTS6Q9UKP5 1117 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TSPAN16Q9UKR8 245 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 DOCK5Q9H7D0 1870 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 IGKV6-21A0A0C4DH24 114 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 NOP56O00567 594 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 HBP1O60381 514 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 RAD17O75943 681 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CABYRO75952 493 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 UPP2O95045 317 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 ITGB3P05106 788 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 MAGEA12P43365 314 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 NPY2RP49146 381 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 NUDT2P50583 147 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 NUP107P57740 925 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 CREB5Q02930 508 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SFSWAPQ12872 951 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 MSLNQ13421 630 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 GOLGA7BQ2TAP0 167 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 PABPC1LQ4VXU2 614 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 PPP6R3Q5H9R7 873 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 LPCAT4Q643R3 524 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 KCNT2Q6UVM3 1135 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SLC26A9Q7LBE3 791 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TMC7Q7Z402 723 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TMEM110Q86TL2 294 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TTC30AQ86WT1 665 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 TTLL6Q8N841 843 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.27□□□□□ -1.41
HERC4-209ENST00000473533 FAM84AQ96KN4 292 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 VAT1Q99536 393 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 RBBP8Q99708 897 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 IL22Q9GZX6 179 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 DHX35Q9H5Z1 703 aaKnown RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 TBCCD1Q9NVR7 557 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 ZNF214Q9UL59 606 aaPredicted RBP6.27□□□□□ -1.41
HERC4-209ENST00000473533 AP4E1Q9UPM8 1137 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 LZTS1Q9Y250 596 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 AP4B1Q9Y6B7 739 aa6.27□□□□□ -1.41
HERC4-209ENST00000473533 DOCK1Q14185 1865 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 WDR27A2RRH5 827 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 TRIM38O00635 465 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 DCXO43602 365 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 LGR5O75473 907 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 PDE5AO76074 875 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 FARP2O94887 1054 aaPredicted RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 IMPDH2P12268 514 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 KCNA4P22459 653 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 PIK3R1P27986 724 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 RPL14P50914 215 aaKnown RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 TRAP1Q12931 704 aaKnown RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 DLG1Q12959 904 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 PRPSAP1Q14558 356 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 RBM44Q6ZP01 1051 aaKnown RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 RBM12BQ8IXT5 1001 aaKnown RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 POU5F2Q8N7G0 328 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 COLGALT1Q8NBJ5 622 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 FBXO27Q8NI29 283 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 HM13Q8TCT9 377 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 PBXIP1Q96AQ6 731 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 CCDC126Q96EE4 140 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 BIRC8Q96P09 236 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 TSPAN18Q96SJ8 248 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 DRC3Q9H069 523 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 CDT1Q9H211 546 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 SMARCAD1Q9H4L7 1026 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 COG4Q9H9E3 785 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 MYOZ2Q9NPC6 264 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 SNX15Q9NRS6 342 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 TUBA8Q9NY65 449 aaPredicted RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 GGA3Q9NZ52 723 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 AK5Q9Y6K8 562 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 ZNF701M0R085 212 aaPredicted RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 PIAS1O75925 651 aa6.26□□□□□ -1.41
HERC4-209ENST00000473533 BCAS2O75934 225 aaPredicted RBP6.26□□□□□ -1.41
HERC4-209ENST00000473533 ALDOAP04075 364 aaKnown RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms