RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PPIBP23284 216 aaKnown RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 C5orf22Q49AR2 442 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 FAM228AQ86W67 206 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 SYTL1Q8IYJ3 562 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF557Q8N988 423 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 GRIP2Q9C0E4 1043 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF609O15014 1411 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 MLYCDO95822 493 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CASP1P29466 404 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ALDH1A3P47895 512 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CASP5P51878 434 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PDK3Q15120 406 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 RNF149Q8NC42 400 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CKAP2Q8WWK9 683 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 S100A13Q99584 98 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 EHD1Q9H4M9 534 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ENTPD7Q9NQZ7 604 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 RGSL1A5PLK6 1076 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 TNFRSF21O75509 655 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 HOXD10P28358 340 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 FEN1P39748 380 aaKnown RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CENPAP49450 140 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF284Q2VY69 593 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ARMC6Q6NXE6 501 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ZHX1-C8orf76Q96EF9 292 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 AGPAT3Q9NRZ7 376 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ZBTB22O15209 634 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF543Q08ER8 600 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PDK4Q16654 411 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 IL31Q6EBC2 164 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 FOXR2Q6PJQ5 311 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 FAM220AQ7Z4H9 259 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CAPSLQ8WWF8 208 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 GALNT8Q9NY28 637 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 NPHP3-ACAD11A0A0J9YXS1 232 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PLA2G6O60733 806 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CYP2A7P20853 494 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PKN1Q16512 942 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 RABL6Q3YEC7 729 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 RP9Q8TA86 221 aaKnown RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 MPZL2O60487 215 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PROSER3Q2NL68 480 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ESRP1Q6NXG1 681 aaKnown RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 LAYNQ6UX15 382 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PM20D2Q8IYS1 436 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 OR52L1Q8NGH7 329 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 TMC2Q8TDI7 906 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 SLAIN2Q9P270 581 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 WDR37Q9Y2I8 494 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 C19orf81C9J6K1 198 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 IFRD1O00458 451 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 CD151P48509 253 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PNPLA8Q9NP80 782 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL6A3-209ENST00000472056 PCDHA3Q9Y5H8 950 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 ABCC3O15438 1527 aa13.57□□□□□ -0.24
COL6A3-209ENST00000472056 A0A087X0T9 212 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 PROSCO94903 275 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 FAM228BP0C875 321 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ERCC2P18074 760 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 PAX3P23760 479 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 RFT1Q96AA3 541 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 EFHD2Q96C19 240 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 PADI4Q9UM07 663 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF335Q9H4Z2 1342 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 NUDT17P0C025 328 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 NCAM1P13591 858 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ITGALP20701 1170 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 LPIN1Q14693 890 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 RNASE11Q8TAA1 199 aaKnown RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 TATDN2Q93075 761 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 APOL5Q9BWW9 433 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ADGRB3O60242 1522 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 SGTAO43765 313 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 SLC26A2P50443 739 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 VBP1P61758 197 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 DOK7Q18PE1 504 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF671Q8TAW3 534 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 SYTL5Q8TDW5 730 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 MASTLQ96GX5 879 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 RHOBTB2Q9BYZ6 727 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 EMC3Q9P0I2 261 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 SSR3Q9UNL2 185 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 KIF28PB7ZC32 967 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 KPNA5O15131 536 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 HS6ST1O60243 411 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 NAMPTP43490 491 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 POLD2P49005 469 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ARL4DP49703 201 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 FAM196AQ6ZSG2 479 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 DNAJB7Q7Z6W7 309 aaPredicted RBP13.56□□□□□ -0.24
COL6A3-209ENST00000472056 GPRC5DQ9NZD1 345 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 TRIM10Q9UDY6 481 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 MOSPD1Q9UJG1 213 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 ZNF232Q9UNY5 417 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 BAIAP2Q9UQB8 552 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 IDO1P14902 403 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 NR4A1P22736 598 aa13.56□□□□□ -0.24
COL6A3-209ENST00000472056 STK32CQ86UX6 486 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms