RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 NEDD8Q15843 81 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 LZTR1Q8N653 840 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 APOL4Q9BPW4 351 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 SLC7A5P2Q9GIP4 190 aa19.4■□□□□ 0.7
CCDC88B-204ENST00000463837 MRPS22P82650 360 aaKnown RBP19.39■□□□□ 0.7
CCDC88B-204ENST00000463837 FAM45BPQ6NSW5 357 aa19.39■□□□□ 0.7
CCDC88B-204ENST00000463837 METTL7BQ6UX53 244 aa19.39■□□□□ 0.7
CCDC88B-204ENST00000463837 TMEM26Q6ZUK4 368 aa19.39■□□□□ 0.7
CCDC88B-204ENST00000463837 KAT2BQ92831 832 aa19.39■□□□□ 0.7
CCDC88B-204ENST00000463837 TPP1O14773 563 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 INPP4BO15327 924 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 ETS1P14921 441 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 RBL1P28749 1068 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 SOAT1P35610 550 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 EIF2B2P49770 351 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 CSE1LP55060 971 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 TRIM25Q14258 630 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 KCNT2Q6UVM3 1135 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 ZSCAN18Q8TBC5 510 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 RORBQ92753 470 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 FAM210AQ96ND0 272 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 PRPF19Q9UMS4 504 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 SCAF8Q9UPN6 1271 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 PNMA8CA0A1B0GUJ8 204 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 ASNA1O43681 348 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 PSMD10O75832 226 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 TGFB3P10600 412 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 C4BPBP20851 252 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 RPL22P35268 128 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 NDST1P52848 882 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 RAB14P61106 215 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 IL5RAQ01344 420 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 BST1Q10588 318 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 PWP1Q13610 501 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 C10orf120Q5SQS8 335 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 BBS12Q6ZW61 710 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 RP9Q8TA86 221 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 WDR60Q8WVS4 1066 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 MKL1Q969V6 931 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 SH3BP1Q9Y3L3 701 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 CYB561D2O14569 222 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 DDX3YO15523 660 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 MED26O95402 600 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 CXCL8P10145 99 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 CLCN3P51790 818 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 OTUD3Q5T2D3 398 aaPredicted RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 CYP2R1Q6VVX0 501 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 TSPAN14Q8NG11 270 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 PIH1D1Q9NWS0 290 aaKnown RBP19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 ENOPH1Q9UHY7 261 aa19.39■□□□□ 0.69
CCDC88B-204ENST00000463837 ANKRD63C9JTQ0 380 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 BACE1P56817 501 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 DLG4P78352 724 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 VAC14Q08AM6 782 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 HGSNATQ68CP4 663 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 TMEM134Q9H6X4 195 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SELENONQ9NZV5 590 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 DSEQ9UL01 958 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 ASMTLO95671 621 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 MARCKSL1P49006 195 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 ANXA11P50995 505 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SOX10P56693 466 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 FUT2Q10981 343 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 ZNF572Q7Z3I7 529 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 PRMT6Q96LA8 375 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 RNPEPQ9H4A4 650 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 PLGRKTQ9HBL7 147 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 ADARB2Q9NS39 739 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 UBP1Q9NZI7 540 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 TMCC3Q9ULS5 477 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 MSH3P20585 1137 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SLC11A2P49281 568 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 TGFB2P61812 414 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 C11orf74Q86VG3 221 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 CEP41Q9BYV8 373 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 RGSL1A5PLK6 1076 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 ZNF862O60290 1169 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 PIGNO95427 931 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 PARNO95453 639 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 CYP1A1P04798 512 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 GLRA2P23416 452 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 GJC2Q5T442 439 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 TDRD10Q5VZ19 366 aaKnown RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 C3orf67Q6ZVT6 689 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 ULK2Q8IYT8 1036 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 RDH11Q8TC12 318 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 TRIM63Q969Q1 353 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SEPT5Q99719 369 aaPredicted RBP19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 RERGLQ9H628 205 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SLIT3O75094 1523 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 PLA2G6O60733 806 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 GJB6O95452 261 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 OR1G1P47890 313 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 OAZ1P54368 228 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 NAA20P61599 178 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SLC25A3Q00325 362 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 MTA1Q13330 715 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 SQLEQ14534 574 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 FBXW8Q8N3Y1 598 aa19.38■□□□□ 0.69
CCDC88B-204ENST00000463837 FNIP1Q8TF40 1166 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms