RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TRIM62Q9BVG3 475 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MAGEB5Q9BZ81 275 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 RBM22Q9NW64 420 aaKnown RBP eCLIP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 KNL1Q8NG31 2342 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 PHGDHO43175 533 aaKnown RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TREHO43280 583 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 RASSF9O75901 435 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MT-CO1P00395 513 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CNTFP26441 200 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 SERPINB8P50452 374 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 NUDT2P50583 147 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 PREPLQ4J6C6 727 aaPredicted RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TRMT10BQ6PF06 316 aaKnown RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 RHBDF2Q6PJF5 856 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 LAYNQ6UX15 382 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 ZBED3Q96IU2 234 aaPredicted RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 PIWIL1Q96J94 861 aaKnown RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 FICDQ9BVA6 458 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TRIM4Q9C037 500 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CERS4Q9HA82 394 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 OR12D3Q9UGF7 316 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TAGLN3Q9UI15 199 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 C2CD2LO14523 706 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 TIMM44O43615 452 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 FBXO21O94952 628 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 VAPBO95292 243 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MMP3P08254 477 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 PGAM1P18669 254 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CMC1Q7Z7K0 106 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CCDC185Q8N715 623 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 NAT8LQ8N9F0 302 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 PGLYRP2Q96PD5 576 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 MTIF3Q9H2K0 278 aaKnown RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 EPB41L4BQ9H329 900 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 BATF3Q9NR55 127 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CACNG4Q9UBN1 327 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 CHKBQ9Y259 395 aa11.92□□□□□ -0.5
NPHP4-204ENST00000460696 COL2A1P02458 1487 aaPredicted RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SLC15A5A6NIM6 579 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 ENO4A6NNW6 628 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 GFAPP14136 432 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 DARSP14868 501 aaKnown RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SMPD1P17405 629 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SOX11P35716 441 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 GPX6P59796 221 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SLC25A11Q02978 314 aaKnown RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 YWHAHQ04917 246 aaPredicted RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 ARHGAP1Q07960 439 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SPRED3Q2MJR0 410 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SNX30Q5VWJ9 437 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 OVOS1Q6IE37 1185 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 CLNKQ7Z7G1 428 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 KCNMB4Q86W47 210 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 TTC30AQ86WT1 665 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 DDIASQ8IXT1 998 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 STK32AQ8WU08 396 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SERAC1Q96JX3 654 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 PTPN18Q99952 460 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 UNC93B1Q9H1C4 597 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 RNPEPL1Q9HAU8 725 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SAR1AQ9NR31 198 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 DCXO43602 365 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 LYPLA1O75608 230 aaPredicted RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 ANXA9O76027 345 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 GRK2P25098 689 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 GRIA1P42261 906 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 PARP6Q2NL67 630 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 TMPRSS6Q8IU80 811 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 NIPA2Q8N8Q9 360 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 INPP5DQ92835 1189 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 TXLNGYQ9BZA5 131 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 ARL8BQ9NVJ2 186 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 GOLGA4Q13439 2230 aaKnown RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 GPR182O15218 404 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 STBD1O95210 358 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 SERPINE1P05121 402 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 NDUFV1P49821 464 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 ANO4Q32M45 955 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 EML3Q32P44 896 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 OTOP2Q7RTS6 562 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 NECAB2Q7Z6G3 386 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 LINC00523Q86TU6 105 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 CHSY1Q86X52 802 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 RPRD1AQ96P16 312 aaPredicted RBP11.91□□□□□ -0.5
NPHP4-204ENST00000460696 CYTH4Q9UIA0 394 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 ANGPTL3Q9Y5C1 460 aa11.91□□□□□ -0.5
NPHP4-204ENST00000460696 AP3B1O00203 1094 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 PSMD3O43242 534 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 UGT1A9O60656 530 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 PDE5AO76074 875 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 METTL18O95568 372 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 AXLP30530 894 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 MRPS5P82675 430 aaKnown RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 SNX17Q15036 470 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 C10orf120Q5SQS8 335 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 LDLRAD1Q5T700 205 aa11.9□□□□□ -0.5
NPHP4-204ENST00000460696 CDCA2Q69YH5 1023 aaPredicted RBP11.9□□□□□ -0.5
NPHP4-204ENST00000460696 TDRPQ86YL5 185 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms