RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ACADMP11310 421 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 CDK11BP21127 795 aaKnown RBP21.95■■□□□ 1.1
HMGB3-205ENST00000455596 ITPKAP23677 461 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 CD6P30203 668 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 HOXD12P35452 270 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 SCNN1AP37088 669 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 MATKP42679 507 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 IRX4P78413 519 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 TRIM61Q5EBN2 209 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 PEAR1Q5VY43 1037 aaPredicted RBP21.95■■□□□ 1.1
HMGB3-205ENST00000455596 ZNF677Q86XU0 584 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 ZNF366Q8N895 744 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 OR2T3Q8NH03 318 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 TTC17Q96AE7 1141 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 PRMT1Q99873 361 aaKnown RBP21.95■■□□□ 1.1
HMGB3-205ENST00000455596 NUSAP1Q9BXS6 441 aaKnown RBP21.95■■□□□ 1.1
HMGB3-205ENST00000455596 NLRC4Q9NPP4 1024 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 TMEM63CQ9P1W3 806 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 KIAA1522Q9P206 1035 aaPredicted RBP21.95■■□□□ 1.1
HMGB3-205ENST00000455596 STAP1Q9ULZ2 295 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 SIK3Q9Y2K2 1263 aa21.95■■□□□ 1.1
HMGB3-205ENST00000455596 MOCS3O95396 460 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 ASLP04424 464 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 SOX5P35711 763 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 CSKP41240 450 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 RNASE9P60153 205 aaKnown RBP21.94■■□□□ 1.1
HMGB3-205ENST00000455596 ST8SIA6P61647 398 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 TYRO3Q06418 890 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 SYCP1Q15431 976 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 FSCBQ5H9T9 825 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 FAM102AQ5T9C2 384 aaPredicted RBP21.94■■□□□ 1.1
HMGB3-205ENST00000455596 TTC39BQ5VTQ0 682 aaPredicted RBP21.94■■□□□ 1.1
HMGB3-205ENST00000455596 SLC41A1Q8IVJ1 513 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 PCMTD1Q96MG8 357 aaPredicted RBP21.94■■□□□ 1.1
HMGB3-205ENST00000455596 HSPA12BQ96MM6 686 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 SPAG5Q96R06 1193 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 NPY6RQ99463 290 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 FBRSQ9HAH7 460 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.94■■□□□ 1.1
HMGB3-205ENST00000455596 SUN2Q9UH99 717 aa21.94■■□□□ 1.1
HMGB3-205ENST00000455596 INTS6Q9UL03 887 aaKnown RBP21.94■■□□□ 1.1
HMGB3-205ENST00000455596 LGALS16A8MUM7 142 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 EPHB6O15197 1021 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 OXTRP30559 389 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 TPMTP51580 245 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 JAM2P57087 298 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 NOMO3P69849 1222 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 PITRM1Q5JRX3 1037 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 RABGAP1LQ5R372 815 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 SLC23A3Q6PIS1 610 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 RABEPKQ7Z6M1 372 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 CACUL1Q86Y37 369 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 XYLT1Q86Y38 959 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 CEP76Q8TAP6 659 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 FOXJ1Q92949 421 aa21.93■■□□□ 1.1
HMGB3-205ENST00000455596 TOE1Q96GM8 510 aaKnown RBP21.93■■□□□ 1.1
HMGB3-205ENST00000455596 ZNF419Q96HQ0 510 aaPredicted RBP21.93■■□□□ 1.1
HMGB3-205ENST00000455596 WSB2Q9NYS7 404 aaPredicted RBP21.93■■□□□ 1.1
HMGB3-205ENST00000455596 NOCTQ9UK39 431 aaKnown RBP21.93■■□□□ 1.1
HMGB3-205ENST00000455596 DOCK4Q8N1I0 1966 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 FAM170AA1A519 330 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 LRRC10BA6NIK2 292 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 TM4SF5O14894 197 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 ZNF18P17022 549 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 STAT1P42224 750 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 SULT1E1P49888 294 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 UBXN1Q04323 297 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 NCAPHQ15003 741 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 DUOXA1Q1HG43 343 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 PPM1JQ5JR12 505 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 SYCP2LQ5T4T6 812 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 NAA35Q5VZE5 725 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 MMS22LQ6ZRQ5 1243 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 SND1Q7KZF4 910 aaKnown RBP eCLIP21.92■■□□□ 1.1
HMGB3-205ENST00000455596 CCAR2Q8N163 923 aaKnown RBP21.92■■□□□ 1.1
HMGB3-205ENST00000455596 AOPEPQ8N6M6 819 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 NEK11Q8NG66 645 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 CPA5Q8WXQ8 436 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 MYO19Q96H55 970 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 NAT10Q9H0A0 1025 aaKnown RBP21.92■■□□□ 1.1
HMGB3-205ENST00000455596 TMEM9BQ9NQ34 198 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 PRSS16Q9NQE7 514 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 GON4LQ3T8J9 2241 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 PCDH15Q96QU1 1955 aa21.92■■□□□ 1.1
HMGB3-205ENST00000455596 A0A1B0GVM2 712 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 TCAF2A6NFQ2 919 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 C4orf47A7E2U8 309 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 F9P00740 461 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 IGLV3-19P01714 112 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 CFIP05156 583 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 SRPRAP08240 638 aaKnown RBP21.91■■□□□ 1.1
HMGB3-205ENST00000455596 CDR2Q01850 454 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 SLC12A1Q13621 1099 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 PLEKHG6Q3KR16 790 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 BRMS1LQ5PSV4 323 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 OTUD1Q5VV17 481 aaPredicted RBP21.91■■□□□ 1.1
HMGB3-205ENST00000455596 FBXL22Q6P050 247 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 RGL4Q8IZJ4 473 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 KDM1BQ8NB78 822 aa21.91■■□□□ 1.1
HMGB3-205ENST00000455596 SLC20A1Q8WUM9 679 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms