RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 BHMTQ93088 406 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 COLEC11Q9BWP8 271 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 AGO4Q9HCK5 861 aaKnown RBP7.94□□□□□ -1.14
NEDD9-204ENST00000448183 MIEF1Q9NQG6 463 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 BLOC1S4Q9NUP1 217 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 ITGA11Q9UKX5 1188 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 RPL26L1Q9UNX3 145 aaKnown RBP7.94□□□□□ -1.14
NEDD9-204ENST00000448183 CHKBQ9Y259 395 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.94□□□□□ -1.144e-7■■■■■ 41
NEDD9-204ENST00000448183 PPRC1Q5VV67 1664 aaKnown RBP7.94□□□□□ -1.14
NEDD9-204ENST00000448183 NRXN1Q9ULB1 1477 aa7.94□□□□□ -1.14
NEDD9-204ENST00000448183 NEXMIFQ5QGS0 1516 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 RAD51BO15315 384 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 CCNT2O60583 730 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ALDH1A2O94788 518 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 RHOCP08134 193 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 DARSP14868 501 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 FGFR2P21802 821 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 AMPD1P23109 780 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 CDC25CP30307 473 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 RFX3P48380 749 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 HK2P52789 917 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 DRG2P55039 364 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 KCNJ2P63252 427 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ROR2Q01974 943 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 DMPKQ09013 629 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 EFEMP1Q12805 493 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 GSTA3Q16772 222 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ZNF618Q5T7W0 954 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ZNF544Q6NX49 715 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 C11orf88Q6PI97 169 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 KCNT2Q6UVM3 1135 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 MARK2Q7KZI7 788 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TXNRD3Q86VQ6 643 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 EPHX4Q8IUS5 362 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 GMCL1P1Q8NEA9 526 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 BHLHE22Q8NFJ8 381 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 CELF6Q96J87 481 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SEMA6AQ9H2E6 1030 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 RIBC2Q9H4K1 309 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ETAA1Q9NY74 926 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 UBA2Q9UBT2 640 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 PCYOX1Q9UHG3 505 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 LNPEPQ9UIQ6 1025 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ANAPC2Q9UJX6 822 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 CD163L1Q9NR16 1453 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SLC12A8A0AV02 714 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 CLTBP09497 229 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 EIF4BP23588 611 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 YY1P25490 414 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 MIPP30301 263 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 LRPAP1P30533 357 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 RPL5P46777 297 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NR1H2P55055 460 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 YWHAZP63104 245 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NFIAQ12857 509 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TAF5Q15542 800 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TSNQ15631 228 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TAB1Q15750 504 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 PDK4Q16654 411 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SHROOM1Q2M3G4 852 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TTC23Q5W5X9 447 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 RAET1EQ8TD07 263 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SEMA4DQ92854 862 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 VAT1Q99536 393 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 CAPN10Q9HC96 672 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 POLE3Q9NRF9 147 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ADPRHL2Q9NX46 363 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SH3BP4Q9P0V3 963 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TRPC4Q9UBN4 977 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 AP3M1Q9Y2T2 418 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 TMX2Q9Y320 296 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 C17orf102A2RUQ5 167 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 KCNK1O00180 336 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 PSMD12O00232 456 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 PAEPP09466 180 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NUDT17P0C025 328 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 PABPC1P11940 636 aaKnown RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 DRD4P21917 467 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 GRK3P35626 688 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SCNN1BP51168 640 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NEK3P51956 506 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NDST1P52848 882 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 MAPK10P53779 464 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NRF1Q16656 503 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 NDUFA5Q16718 116 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ALFQ53S48 1182 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 ZNF57Q68EA5 555 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 SCARA3Q6AZY7 606 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 WDR59Q6PJI9 974 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 DNAJC14Q6Y2X3 702 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 KBTBD2Q8IY47 623 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 C8orf59Q8N0T1 100 aaPredicted RBP7.93□□□□□ -1.14
NEDD9-204ENST00000448183 LZTR1Q8N653 840 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 LINC00116Q8NCU8 138 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 APBA2Q99767 749 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 MYOZ2Q9NPC6 264 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 VPS28Q9UK41 221 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 DSEQ9UL01 958 aa7.93□□□□□ -1.14
NEDD9-204ENST00000448183 GTF2A1LQ9UNN4 478 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms