RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 C12orf40Q86WS4 652 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 CIR1Q86X95 450 aaPredicted RBP17.53■□□□□ 0.4
COL7A1-202ENST00000422991 RHOT1Q8IXI2 618 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 ETFBKMTQ8IXQ9 262 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 SYCE1Q8N0S2 351 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 CFAP52Q8N1V2 620 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 TBC1D31Q96DN5 1066 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 MSANTD3Q96H12 275 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 EPAS1Q99814 870 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 PPARGC1AQ9UBK2 798 aaKnown RBP17.53■□□□□ 0.4
COL7A1-202ENST00000422991 WNT16Q9UBV4 365 aa17.53■□□□□ 0.4
COL7A1-202ENST00000422991 F5P12259 2224 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 A0A1B0GVM2 712 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 TCAF2A6NFQ2 919 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 USP27XA6NNY8 438 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 SRGAP2O75044 1071 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 HOXC13P31276 330 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 HTR7P34969 479 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 ARSEP51690 589 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 ZNF135P52742 658 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 MLF2Q15773 248 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 ATP13A4Q4VNC1 1196 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 PPP6R3Q5H9R7 873 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 NAIF1Q69YI7 327 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 CHST9Q7L1S5 443 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 NT5DC3Q86UY8 548 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 RALGPS2Q86X27 583 aaPredicted RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 CCAR2Q8N163 923 aaKnown RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 FAM71BQ8TC56 605 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 ZYG11BQ9C0D3 744 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 PCDH18Q9HCL0 1135 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 ARHGEF3Q9NR81 526 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 KLHL11Q9NVR0 708 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 TRMT1Q9NXH9 659 aaKnown RBP17.52■□□□□ 0.4
COL7A1-202ENST00000422991 STIM2Q9P246 746 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 FBXL21Q9UKT6 434 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 CA14Q9ULX7 337 aa17.52■□□□□ 0.4
COL7A1-202ENST00000422991 SHISA7A6NL88 538 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 CREB3O43889 395 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 CNTN5O94779 1100 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 LUC7L3O95232 432 aaKnown RBP17.51■□□□□ 0.39
COL7A1-202ENST00000422991 FTCDO95954 541 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 CTNNA1P35221 906 aaKnown RBP17.51■□□□□ 0.39
COL7A1-202ENST00000422991 EIF2DP41214 584 aaKnown RBP17.51■□□□□ 0.39
COL7A1-202ENST00000422991 MARCKSL1P49006 195 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 AMPD2Q01433 879 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 ALFQ53S48 1182 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 HS1BP3Q53T59 392 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 TXNDC11Q6PKC3 985 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 TRIM67Q6ZTA4 783 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 TPRG1Q6ZUI0 275 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 NAT16Q8N8M0 369 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 WFDC5Q8TCV5 224 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 TSC1Q92574 1164 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 ALS2CR12Q96Q35 445 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 XPO6Q96QU8 1125 aaKnown RBP17.51■□□□□ 0.39
COL7A1-202ENST00000422991 SLC2A11Q9BYW1 496 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 DNAJC17Q9NVM6 304 aaKnown RBP17.51■□□□□ 0.39
COL7A1-202ENST00000422991 MPP6Q9NZW5 540 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF212Q9UDV6 495 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 FBXO10Q9UK96 956 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 CLEC4EQ9ULY5 219 aa17.51■□□□□ 0.39
COL7A1-202ENST00000422991 KRBA1A5PL33 1030 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 GOLGA6L9A6NEM1 432 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 H3BRJ5 948 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 EEF2KO00418 725 aaKnown RBP17.5■□□□□ 0.39
COL7A1-202ENST00000422991 TULP3O75386 442 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CLDN11O75508 207 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 TNNT1P13805 278 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 RHOQP17081 205 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 GOT1P17174 413 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CTNNA2P26232 953 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 HCAR3P49019 387 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CDH4P55283 916 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CDH6P55285 790 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 TPI1P60174 286 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 PRKCQQ04759 706 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 KRT81Q14533 505 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 RWDD4Q6NW29 188 aaKnown RBP17.5■□□□□ 0.39
COL7A1-202ENST00000422991 RFX8Q6ZV50 586 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 PEX26Q7Z412 305 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 NLRP14Q86W24 1093 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 MFN1Q8IWA4 741 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 PHTF2Q8N3S3 785 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CARNMT1Q8N4J0 409 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 TRIM58Q8NG06 486 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 KRT35Q92764 455 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 KCND1Q9NSA2 647 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 DDX56Q9NY93 547 aaKnown RBP17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CWC15Q9P013 229 aaKnown RBP17.5■□□□□ 0.39
COL7A1-202ENST00000422991 AMFRQ9UKV5 643 aa17.5■□□□□ 0.39
COL7A1-202ENST00000422991 CHD5Q8TDI0 1954 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 TECTAO75443 2155 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 PALM2-AKAP2B1ALY0 433 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 FGF10O15520 208 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 KRT1P04264 644 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 CD48P09326 243 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 EPHB2P29323 1055 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 ARL4AP40617 200 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 SLC6A11P48066 632 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms