RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 C16orf71Q8IYS4 520 aaPredicted RBP3□□□□□ -1.93
VPS41-206ENST00000418457 SEMA6DQ8NFY4 1073 aa3□□□□□ -1.93
VPS41-206ENST00000418457 OR1N1Q8NGS0 311 aa3□□□□□ -1.93
VPS41-206ENST00000418457 STT3BQ8TCJ2 826 aa3□□□□□ -1.93
VPS41-206ENST00000418457 TRAPPC12Q8WVT3 735 aa3□□□□□ -1.93
VPS41-206ENST00000418457 GLMPQ8WWB7 406 aa3□□□□□ -1.93
VPS41-206ENST00000418457 NPIPB3Q92617 1050 aa3□□□□□ -1.93
VPS41-206ENST00000418457 TRIM44Q96DX7 344 aaPredicted RBP3□□□□□ -1.93
VPS41-206ENST00000418457 MCRS1Q96EZ8 462 aa3□□□□□ -1.93
VPS41-206ENST00000418457 REXO5Q96IC2 774 aaKnown RBP3□□□□□ -1.93
VPS41-206ENST00000418457 HIC2Q96JB3 615 aa3□□□□□ -1.93
VPS41-206ENST00000418457 RITA1Q96K30 269 aa3□□□□□ -1.93
VPS41-206ENST00000418457 MAP7D2Q96T17 732 aa3□□□□□ -1.93
VPS41-206ENST00000418457 HERPUD2Q9BSE4 406 aa3□□□□□ -1.93
VPS41-206ENST00000418457 SORBS1Q9BX66 1292 aaKnown RBP3□□□□□ -1.93
VPS41-206ENST00000418457 RNF26Q9BY78 433 aaPredicted RBP3□□□□□ -1.93
VPS41-206ENST00000418457 MYLK2Q9H1R3 596 aa3□□□□□ -1.93
VPS41-206ENST00000418457 CDCP1Q9H5V8 836 aa3□□□□□ -1.93
VPS41-206ENST00000418457 CCDC134Q9H6E4 229 aa3□□□□□ -1.93
VPS41-206ENST00000418457 MLXIPQ9HAP2 919 aa3□□□□□ -1.93
VPS41-206ENST00000418457 KCNK9Q9NPC2 374 aa3□□□□□ -1.93
VPS41-206ENST00000418457 PTGFRNQ9P2B2 879 aa3□□□□□ -1.93
VPS41-206ENST00000418457 MAFFQ9ULX9 164 aa3□□□□□ -1.93
VPS41-206ENST00000418457 PCDHB7Q9Y5E2 793 aa3□□□□□ -1.93
VPS41-206ENST00000418457 ATP10BO94823 1461 aa3□□□□□ -1.93
VPS41-206ENST00000418457 MYOM2P54296 1465 aa3□□□□□ -1.93
VPS41-206ENST00000418457 PLA2R1Q13018 1463 aa3□□□□□ -1.93
VPS41-206ENST00000418457 KIF1BO60333 1816 aa3□□□□□ -1.93
VPS41-206ENST00000418457 SETBP1Q9Y6X0 1596 aa3□□□□□ -1.93
VPS41-206ENST00000418457 IBTKQ9P2D0 1353 aaPredicted RBP3□□□□□ -1.93
VPS41-206ENST00000418457 IFT172Q9UG01 1749 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 ARHGAP5Q13017 1502 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 ARAP3Q8WWN8 1544 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 SYCP2Q9BX26 1530 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 KIF16BQ96L93 1317 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 SHPRHQ149N8 1683 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 IQSEC2Q5JU85 1478 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 LOC105369274A0A096LPK9 316 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 LOC102723532A0A0G2JNH3 316 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 FAM90A18PA6NE21 464 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 FAM90A16PA6NEW6 464 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 FAM90A9PA6NNJ1 464 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 FAM90A5PA8MXJ8 464 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 PRRT4C9JH25 899 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 NKX2-8O15522 239 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 RNF8O76064 485 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 LARGE1O95461 756 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 FAM90A15PP0C7V4 464 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 FAM90A14PP0C7W9 464 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 CYP2D6P10635 497 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 CYP2A6P11509 494 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 CD38P28907 300 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 SLC8A1P32418 973 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 HALP42357 657 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 RNASELQ05823 741 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 SF3A3Q12874 501 aaKnown RBP eCLIP2.99□□□□□ -1.93
VPS41-206ENST00000418457 SLC14A1Q13336 389 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 DHX8Q14562 1220 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 RPS6KA2Q15349 733 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 PFKFB3Q16875 520 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 TIGD6Q17RP2 521 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 AAK1Q2M2I8 961 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 TRIM60Q495X7 471 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 AWAT1Q58HT5 328 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 NFRKBQ6P4R8 1299 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 C16orf89Q6UX73 402 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 RANBP10Q6VN20 620 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 ZNF782Q6ZMW2 699 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 MTERF4Q7Z6M4 381 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 WDR63Q8IWG1 891 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 HSCBQ8IWL3 235 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 OR4N4Q8N0Y3 316 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 GALNT15Q8N3T1 639 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 NKAPQ8N5F7 415 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 ANKRD42Q8N9B4 389 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 SCAMP5Q8TAC9 235 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 OTUD7AQ8TE49 926 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 HMGB4Q8WW32 186 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 CPT1BQ92523 772 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 RUBCNQ92622 972 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 AKAP1Q92667 903 aaKnown RBP eCLIP2.99□□□□□ -1.93
VPS41-206ENST00000418457 ANP32BQ92688 251 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 TRIM63Q969Q1 353 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 PKNOX2Q96KN3 472 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 NAP1L5Q96NT1 182 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 TMEM120AQ9BXJ8 343 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 NUAK2Q9H093 628 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 BRD8Q9H0E9 1235 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 VPS16Q9H269 839 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 PABPC3Q9H361 631 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 CHMP4BQ9H444 224 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 MYH16Q9H6N6 1097 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 ELAC1Q9H777 363 aaKnown RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 RRAGDQ9NQL2 400 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 PRDM8Q9NQV8 689 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 ARL8BQ9NVJ2 186 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 SEMA5BQ9P283 1151 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 C19orf53Q9UNZ5 99 aaPredicted RBP2.99□□□□□ -1.93
VPS41-206ENST00000418457 CNTN6Q9UQ52 1028 aa2.99□□□□□ -1.93
VPS41-206ENST00000418457 RIPOR2Q9Y4F9 1068 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms