RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SSTR3P32745 418 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 SERPINB5P36952 375 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF135P52742 658 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 MBTD1Q05BQ5 628 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TBL3Q12788 808 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 KLF10Q13118 480 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 UBAP2LQ14157 1087 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PIGGQ5H8A4 983 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 N4BP2L1Q5TBK1 243 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TRMT10BQ6PF06 316 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 DHRS4L2Q6PKH6 230 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CCDC117Q8IWD4 279 aaPredicted RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PGAM4Q8N0Y7 254 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 LINC01465Q8N7H1 131 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PDCD6IPQ8WUM4 868 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TFB1MQ8WVM0 346 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 ITFG2Q969R8 447 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 IL22Q9GZX6 179 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CRISPLD2Q9H0B8 497 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 BRD8Q9H0E9 1235 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 CDT1Q9H211 546 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 C10orf88Q9H8K7 445 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 NSMCE4AQ9NXX6 385 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 UTP6Q9NYH9 597 aaKnown RBP5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PCSK1NQ9UHG2 260 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 RIMS3Q9UJD0 308 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 TELO2Q9Y4R8 837 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 NR2E3Q9Y5X4 410 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 SQORQ9Y6N5 450 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 COL1A2P08123 1366 aa5.89□□□□□ -1.47
CCDC88A-203ENST00000412148 PRSS51A0A1B0GVH4 220 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MAGEB16A2A368 324 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RGSL1A5PLK6 1076 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TRIM64CA6NLI5 447 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 KPNA7A9QM74 516 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF701M0R085 212 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ITM2AO43736 263 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 FAM163BP0C2L3 166 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RALBP11234 206 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 PTPRAP18433 802 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 CYP2F1P24903 491 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SDC4P31431 198 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 GRIA2P42262 883 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 CPA2P48052 419 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SERPINB8P50452 374 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 HDAC4P56524 1084 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TFAMQ00059 246 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 FOLH1Q04609 750 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DPYSQ14117 519 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ADGRE1Q14246 886 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 PAFAH1B3Q15102 231 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MMEL1Q495T6 779 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 INTS6LQ5JSJ4 861 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RARS2Q5T160 578 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 B3GNT6Q6ZMB0 384 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TMC7Q7Z402 723 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TMEM135Q86UB9 458 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RIOX2Q8IUF8 465 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 CNTD1Q8N815 330 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TTLL6Q8N841 843 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RIN3Q8TB24 985 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 CLPTM1LQ96KA5 538 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TWNKQ96RR1 684 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 UHRF1Q96T88 793 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TTC1Q99614 292 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RBBP8Q99708 897 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 FERMT1Q9BQL6 677 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 NT5C1AQ9BXI3 368 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 XPNPEP3Q9NQH7 507 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SARDHQ9UL12 918 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 C15orf38-AP3S2A0A0A6YYH1 394 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ARHGAP10A1A4S6 786 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 FAM155AB1AL88 458 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 MATN2O00339 956 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TPP1O14773 563 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 UGT1A9O60656 530 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 DNAJA2O60884 412 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 USP1O94782 785 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TFAP2AP05549 437 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RAG1P15918 1043 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ALDH1A3P47895 512 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 LIMK2P53671 638 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 AQP4P55087 323 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 TUBA4AP68366 448 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 RBP5P82980 135 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SULT2A1Q06520 285 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF33AQ06730 810 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ILF2Q12905 390 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF423Q2M1K9 1284 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 LRRC23Q53EV4 343 aaPredicted RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ZNF394Q53GI3 561 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 HEATR6Q6AI08 1181 aaKnown RBP5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 KLC3Q6P597 504 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ARPINQ7Z6K5 226 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 SPATA24Q86W54 205 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 HTR3CQ8WXA8 447 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 NT5C3BQ969T7 300 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 WNK4Q96J92 1243 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 BEGAINQ9BUH8 593 aa5.88□□□□□ -1.47
CCDC88A-203ENST00000412148 ADAM33Q9BZ11 813 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms