RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 C1QAP02745 245 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 VAV1P15498 845 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 ERCC2P18074 760 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 PGAM1P18669 254 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 BMP8BP34820 402 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 MAGEA10P43363 369 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 YWHAHQ04917 246 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 GALNT2Q10471 571 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 BSPRYQ5W0U4 402 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 LVRNQ6Q4G3 990 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 HFE2Q6ZVN8 426 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 ZNF534Q76KX8 674 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 BHLHA9Q7RTU4 235 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 C4orf33Q8N1A6 199 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 PYROXD2Q8N2H3 581 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 SLC43A3Q8NBI5 491 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 RAB3IL1Q8TBN0 382 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 KCNK16Q96T55 309 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 PAIP2Q9BPZ3 127 aaKnown RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 IQCGQ9H095 443 aaKnown RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 PRDM12Q9H4Q4 367 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 MOCS1Q9NZB8 636 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 SLC12A4Q9UP95 1085 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 USH1CQ9Y6N9 552 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 CAPN7Q9Y6W3 813 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 A0A1W2PQ45 241 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 A0A1W2PQY0 241 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 KLF11O14901 512 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 EDF1O60869 148 aaKnown RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 DCTN3O75935 186 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 OAZ2O95190 189 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 DHRS4L1P0CG22 281 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 CKBP12277 381 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 BDNFP23560 247 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 FOXN2P32314 431 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 SCTRP47872 440 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 NEK3P51956 506 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 NRG1Q02297 640 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 DSC1Q08554 894 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 PPP2R5DQ14738 602 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 TRIM60Q495X7 471 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 SPANXN3Q5MJ09 141 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 CD300LGQ6UXG3 332 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 UNC5AQ6ZN44 842 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 MARK2Q7KZI7 788 aaKnown RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 CTAGE3PQ8IX95 158 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 RNF169Q8NCN4 708 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 CCNYQ8ND76 341 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 GDF15Q99988 308 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 CATSPERBQ9H7T0 1116 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 COMMD8Q9NX08 183 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 ARHGEF38Q9NXL2 777 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 PHTF1Q9UMS5 762 aa13.95□□□□□ -0.18
LIMS1-205ENST00000410093 TIMM13Q9Y5L4 95 aaPredicted RBP13.95□□□□□ -0.18
LIMS1-205ENST00000410093 ALPK3Q96L96 1907 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 COPEO14579 308 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 TGDSO95455 350 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 POLBP06746 335 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 TROVE2P10155 538 aaKnown RBP eCLIP13.94□□□□□ -0.18
LIMS1-205ENST00000410093 SLC2A3P11169 496 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 CCNFP41002 786 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 AFF1P51825 1210 aaKnown RBP13.94□□□□□ -0.18
LIMS1-205ENST00000410093 WASHC5Q12768 1159 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 SMARCB1Q12824 385 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 EIF4EBP2Q13542 120 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-205ENST00000410093 PRPSAP1Q14558 356 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 SETDB1Q15047 1291 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 NOMO2Q5JPE7 1267 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 C1orf53Q5VUE5 145 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 DENND5BQ6ZUT9 1274 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 SH2D5Q6ZV89 423 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 LINC00523Q86TU6 105 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 TAB3Q8N5C8 712 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-205ENST00000410093 PPM1NQ8N819 430 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 TCP10LQ8TDR4 215 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 NDRG1Q92597 394 aaKnown RBP13.94□□□□□ -0.18
LIMS1-205ENST00000410093 ZNF75CPQ92670 426 aaPredicted RBP13.94□□□□□ -0.18
LIMS1-205ENST00000410093 TSGA13Q96PP4 275 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 LGMNQ99538 433 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 SMOC2Q9H3U7 446 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 FBXO44Q9H4M3 255 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 OR12D3Q9UGF7 316 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 MAD1L1Q9Y6D9 718 aa13.94□□□□□ -0.18
LIMS1-205ENST00000410093 ZNF638Q14966 1978 aaKnown RBP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 SYNJ2BP-COX16A0A087WUM0 186 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 AVILO75366 819 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 AP2A1O95782 977 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 HOXC13P31276 330 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 CCR1P32246 355 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 GARSP41250 739 aaKnown RBP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 MAGEA11P43364 429 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 NPY2RP49146 381 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 PLXNA3P51805 1871 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 NRLP54845 237 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 PITX1P78337 314 aaPredicted RBP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 FAAP100Q0VG06 881 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 EFTUD2Q15029 972 aaKnown RBP eCLIP13.93□□□□□ -0.18
LIMS1-205ENST00000410093 SLC1A5Q15758 541 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 GALNTL6Q49A17 601 aa13.93□□□□□ -0.18
LIMS1-205ENST00000410093 FAXCQ5TGI0 409 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms