RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SLC9B1Q4ZJI4 515 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 KYAT3Q6YP21 454 aaKnown RBP12.45□□□□□ -0.42
CLIP3-201ENST00000360535 KDELC2Q7Z4H8 507 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 EGFL6Q8IUX8 553 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 SPATA6LQ8N4H0 392 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 SLC35F5Q8WV83 523 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 USP13Q92995 863 aaPredicted RBP12.45□□□□□ -0.42
CLIP3-201ENST00000360535 LRRC39Q96DD0 335 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 SCYL1Q96KG9 808 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 SPATA13Q96N96 652 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 MPHOSPH6Q99547 160 aaKnown RBP12.45□□□□□ -0.42
CLIP3-201ENST00000360535 EIF2AQ9BY44 585 aaKnown RBP12.45□□□□□ -0.42
CLIP3-201ENST00000360535 MTMR10Q9NXD2 777 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 PGM3O95394 542 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 LGALS2P05162 132 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 ADIGQ0VDE8 80 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 TTLL4Q14679 1199 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 MMEL1Q495T6 779 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 RNF111Q6ZNA4 994 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 CATSPER4Q7RTX7 472 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 DHDDSQ86SQ9 333 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 OR6Y1Q8NGX8 325 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.45□□□□□ -0.42
CLIP3-201ENST00000360535 COG4Q9H9E3 785 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 SNX15Q9NRS6 342 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 MOCS1Q9NZB8 636 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 ITGA11Q9UKX5 1188 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 M0QYT0 321 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 BIRC5O15392 142 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 KLHL2O95198 593 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 NUDT2P50583 147 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 PKNOX1P55347 436 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ABCE1P61221 599 aaKnown RBP12.44□□□□□ -0.42
CLIP3-201ENST00000360535 DLG1Q12959 904 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 MED21Q13503 144 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 PPM1LQ5SGD2 360 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 USP33Q8TEY7 942 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 MFSD3Q96ES6 412 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 FCRL3Q96P31 734 aaPredicted RBP12.44□□□□□ -0.42
CLIP3-201ENST00000360535 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLIP3-201ENST00000360535 COPG2Q9UBF2 871 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 CDH22Q9UJ99 828 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 DOCK1Q14185 1865 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 MDM4O15151 490 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 TSPAN1O60635 241 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 EPHA3P29320 983 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 GSTT1P30711 240 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 GNL1P36915 607 aaPredicted RBP12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ARCQ7LC44 396 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 EXOC8Q8IYI6 725 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ACVR1CQ8NER5 493 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 MAPK15Q8TD08 544 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 RTP4Q96DX8 246 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 QKIQ96PU8 341 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SORT1Q99523 831 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SNX25Q9H3E2 840 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 DCDC2Q9UHG0 476 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SLC39A10Q9ULF5 831 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ASB3Q9Y575 518 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 CAPN8A6NHC0 703 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 POLBP06746 335 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 CHRNGP07510 517 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 TPSB2P20231 275 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 INCA1Q0VD86 236 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SEMA5AQ13591 1074 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 CCNIQ14094 377 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 TPSAB1Q15661 275 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 CERCAMQ5T4B2 595 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 IL31Q6EBC2 164 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 NAPRTQ6XQN6 538 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 TMEM110Q86TL2 294 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ZNF567Q8N184 647 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ARNTL2Q8WYA1 636 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SGF29Q96ES7 293 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 OR52B2Q96RD2 323 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SLC4A5Q9BY07 1137 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 POMPQ9Y244 141 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 SNX10Q9Y5X0 201 aa12.44□□□□□ -0.42
CLIP3-201ENST00000360535 ZNF638Q14966 1978 aaKnown RBP12.44□□□□□ -0.42
CLIP3-201ENST00000360535 PHGDHO43175 533 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 ZBTB14O43829 449 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 SNUPNO95149 360 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 LTFP02788 710 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 ENO3P13929 434 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 AOC1P19801 751 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 MX2P20592 715 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 ADCYAP1R1P41586 468 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 NUMBP49757 651 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 TUBB3Q13509 450 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 DPYSL2Q16555 572 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 CWF19L1Q69YN2 538 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 CERS2Q96G23 380 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 OSMRQ99650 979 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 VPS33BQ9H267 617 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 NXF3Q9H4D5 531 aaKnown RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 SETD4Q9NVD3 440 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 A0A096LPK6 155 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 ZFXP17010 805 aaPredicted RBP12.43□□□□□ -0.42
CLIP3-201ENST00000360535 ITGAXP20702 1163 aa12.43□□□□□ -0.42
CLIP3-201ENST00000360535 TMEM198Q66K66 360 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms