RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 POC5Q8NA72 575 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CCDC115Q96NT0 180 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 DCLK3Q9C098 648 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 USP18Q9UMW8 372 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 PREX2Q70Z35 1606 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 GTF2H1P32780 548 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 PKN1Q16512 942 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 ACOX2Q99424 681 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CIDEBQ9UHD4 219 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 IRGMA1A4Y4 181 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 TBX3O15119 743 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 TNK2Q07912 1038 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CUL2Q13617 745 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 TMEM159Q96B96 161 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CITED4Q96RK1 184 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 SENP2Q9HC62 589 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 NMT1P30419 496 aaKnown RBP9.48□□□□□ -0.89
VPS13A-203ENST00000360280 ATF7IP2Q5U623 682 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 STRIP1Q5VSL9 837 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 HPS6Q86YV9 775 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 FBXO39Q8N4B4 442 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 PRCCQ92733 491 aaPredicted RBP9.48□□□□□ -0.89
VPS13A-203ENST00000360280 NMRAL1Q9HBL8 299 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 AP4E1Q9UPM8 1137 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 DHFRP00374 187 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 TAF6P49848 677 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CDK7P50613 346 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 AP3S2P59780 193 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 FAM20CQ8IXL6 584 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 PLEKHG4BQ96PX9 1271 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 ERGIC2Q96RQ1 377 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 SEC22BO75396 215 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 ALDH9A1P49189 494 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 PTPRKQ15262 1439 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 ERMARDQ5T6L9 678 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 SUN5Q8TC36 379 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 EFHD2Q96C19 240 aaPredicted RBP9.48□□□□□ -0.89
VPS13A-203ENST00000360280 TMEM260Q9NX78 707 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 MLXQ9UH92 298 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 GNB5O14775 395 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 PGK1P00558 417 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CIAPIN1Q6FI81 312 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 ITCHQ96J02 903 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 CRYL1Q9Y2S2 319 aa9.48□□□□□ -0.89
VPS13A-203ENST00000360280 NR2C2P49116 596 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 SPANXN3Q5MJ09 141 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 EMC1Q8N766 993 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 CAVIN3Q969G5 261 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 IQCMA0A1B0GVH7 501 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 TPD52L2O43399 206 aaKnown RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 TDP2O95551 362 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 PTPN3P26045 913 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 NEK3P51956 506 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 RGS1Q08116 209 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 NAB1Q13506 487 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 R3HCC1LQ7Z5L2 792 aaKnown RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 OR6J1Q8NGC5 347 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 TBC1D13Q9NVG8 400 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 SHOC2Q9UQ13 582 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 HECW2Q9P2P5 1572 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 A0A087X1B8 175 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 MED24O75448 989 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 BGNP21810 368 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 S100A2P29034 98 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 KCNJ1P48048 391 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 CYB5R4Q7L1T6 521 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 PEX5LQ8IYB4 626 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 GORASP1Q9BQQ3 440 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 CCNB1IP1Q9NPC3 277 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 PIH1D3Q9NQM4 214 aaKnown RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 DDIT4Q9NX09 232 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 METP08581 1390 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 A0A1W2PQ72 361 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 CHURC1-FNTBB4DL54 471 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 RBMXL2O75526 392 aaKnown RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 FXR1P51114 621 aaKnown RBP eCLIP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 EMC2Q15006 297 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 OR56A4Q8NGH8 313 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 ZNF518BQ9C0D4 1074 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 PNPLA8Q9NP80 782 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 IQCF2Q8IXL9 164 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 OTUD5Q96G74 571 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 EHD1Q9H4M9 534 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 SPAG4Q9NPE6 437 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 ZNF221Q9UK13 617 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 NPHP3-ACAD11A0A0J9YXS1 232 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 ARHGEF33A8MVX0 844 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 PSIP1O75475 530 aaKnown RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 CYP7B1O75881 506 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 QRICH1Q2TAL8 776 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 MSANTD1Q6ZTZ1 278 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 BHLHE22Q8NFJ8 381 aaPredicted RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 LRRC4BQ9NT99 713 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 TRMT13Q9NUP7 481 aaKnown RBP9.47□□□□□ -0.89
VPS13A-203ENST00000360280 KCNK4Q9NYG8 393 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 SSR3Q9UNL2 185 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 TUBA3CQ13748 450 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 BHLHB9Q6PI77 547 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 ZNF554Q86TJ5 538 aa9.47□□□□□ -0.89
VPS13A-203ENST00000360280 SYTL5Q8TDW5 730 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms