RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 PTGIRP43119 386 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 NR2C2P49116 596 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 VCPP55072 806 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 EIF3EP60228 445 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 BYSLQ13895 437 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 OASLQ15646 514 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 CTC1Q2NKJ3 1217 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 GLE1Q53GS7 698 aaKnown RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 ADGRF1Q5T601 910 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 RFWD3Q6PCD5 774 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 LGI2Q8N0V4 545 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 NETO2Q8NC67 525 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 TTC16Q8NEE8 873 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 CCDC26Q8TAB7 109 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 USP13Q92995 863 aaPredicted RBP20.5■□□□□ 0.87
CLN3-205ENST00000359984 LRCH3Q96II8 777 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 CATSPERBQ9H7T0 1116 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 ZMYM5Q9UJ78 669 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 STOML2Q9UJZ1 356 aa20.5■□□□□ 0.87
CLN3-205ENST00000359984 REV3LO60673 3130 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 F5H5T6 163 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 FGF10O15520 208 aaPredicted RBP20.49■□□□□ 0.87
CLN3-205ENST00000359984 RRP9O43818 475 aaKnown RBP20.49■□□□□ 0.87
CLN3-205ENST00000359984 LATS1O95835 1130 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 IGFBP4P22692 258 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 SLC7A5Q01650 507 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 DR1Q01658 176 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 HTR3DQ70Z44 454 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 NPWQ8N729 165 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 ATL2Q8NHH9 583 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 SH3RF2Q8TEC5 729 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 FAM161BQ96MY7 647 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 RUNDC3BQ96NL0 473 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 RPRD1AQ96P16 312 aaPredicted RBP20.49■□□□□ 0.87
CLN3-205ENST00000359984 TDP1Q9NUW8 608 aa20.49■□□□□ 0.87
CLN3-205ENST00000359984 DRG1Q9Y295 367 aaKnown RBP20.49■□□□□ 0.87
CLN3-205ENST00000359984 MCF2LO15068 1137 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 TTI1O43156 1089 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 CNTN5O94779 1100 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 FSHRP23945 695 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 DLX2Q07687 328 aaPredicted RBP20.48■□□□□ 0.87
CLN3-205ENST00000359984 DHX34Q14147 1143 aaKnown RBP20.48■□□□□ 0.87
CLN3-205ENST00000359984 ELF2Q15723 593 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 C5orf22Q49AR2 442 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 ALFQ53S48 1182 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 MAATS1Q7Z4T9 603 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 ZC3H18Q86VM9 953 aaKnown RBP20.48■□□□□ 0.87
CLN3-205ENST00000359984 NLRP14Q86W24 1093 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 TP53INP2Q8IXH6 220 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 CCDC33Q8N5R6 958 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 ZYG11BQ9C0D3 744 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 KLC2Q9H0B6 622 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 C10orf88Q9H8K7 445 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 ANKZF1Q9H8Y5 726 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 LSM7Q9UK45 103 aaKnown RBP20.48■□□□□ 0.87
CLN3-205ENST00000359984 ZNF148Q9UQR1 794 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 SH3BP1Q9Y3L3 701 aa20.48■□□□□ 0.87
CLN3-205ENST00000359984 WASH4PA8MWX3 477 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 TRDMT1O14717 391 aaKnown RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 TBX10O75333 385 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 PRAMEF12O95522 483 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 RBP3P10745 1247 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 RHOQP17081 205 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 CCDC70Q6NSX1 233 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 B4GALNT4Q76KP1 1039 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 ARID3BQ8IVW6 561 aaPredicted RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 RTL3Q8N8U3 475 aaKnown RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 S1PR5Q9H228 398 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 ADAM7Q9H2U9 754 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 DMGDHQ9UI17 866 aaKnown RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 C2orf16Q68DN1 1984 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 H7C0C1 242 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 ITGAVP06756 1048 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 ATP5OP48047 213 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 PRPF38BQ5VTL8 546 aaKnown RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 CIR1Q86X95 450 aaPredicted RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 DDX42Q86XP3 938 aaKnown RBP eCLIP20.47■□□□□ 0.87
CLN3-205ENST00000359984 RIN3Q8TB24 985 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 LRRN4Q8WUT4 740 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 SLCO2A1Q92959 643 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 CCDC114Q96M63 670 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 PRICKLE1Q96MT3 831 aaPredicted RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 OLFM3Q96PB7 478 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 DDX50Q9BQ39 737 aaKnown RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 HINFPQ9BQA5 517 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 TMEM121Q9BTD3 319 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 NDFIP2Q9NV92 336 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 CLDND1Q9NY35 253 aa20.47■□□□□ 0.87
CLN3-205ENST00000359984 FEZ2Q9UHY8 353 aaPredicted RBP20.47■□□□□ 0.87
CLN3-205ENST00000359984 ECEL1O95672 775 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 BZW1Q7L1Q6 419 aaKnown RBP20.46■□□□□ 0.87
CLN3-205ENST00000359984 TFAP2DQ7Z6R9 452 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 JAMLQ86YT9 394 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 NPAS3Q8IXF0 933 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 FAM217AQ8IXS0 508 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 CFAP52Q8N1V2 620 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 ZSCAN18Q8TBC5 510 aaPredicted RBP20.46■□□□□ 0.87
CLN3-205ENST00000359984 TMEM248Q9NWD8 314 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 ZNF510Q9Y2H8 683 aa20.46■□□□□ 0.87
CLN3-205ENST00000359984 E2F8A0AVK6 867 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms