RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 RGS2P41220 211 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 SERPINB9P50453 376 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 RASSF2P50749 326 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 HSF5Q4G112 596 aaPredicted RBP19.88■□□□□ 0.77
COL9A3-201ENST00000343916 PACS1Q6VY07 963 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 OR52K1Q8NGK4 314 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 EIF2B3Q9NR50 452 aaKnown RBP19.88■□□□□ 0.77
COL9A3-201ENST00000343916 SLC38A7Q9NVC3 462 aa19.88■□□□□ 0.77
COL9A3-201ENST00000343916 TPP1O14773 563 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 PGAM1P18669 254 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 PTPN4P29074 926 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 LHX1P48742 406 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 TEX44Q53QW1 395 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 AGMOQ6ZNB7 445 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 TRPV1Q8NER1 839 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 FERMT1Q9BQL6 677 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 GORASP1Q9BQQ3 440 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 SAR1AQ9NR31 198 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 MKS1Q9NXB0 559 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 DIAPH2O60879 1101 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 LTFP02788 710 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 PTPN3P26045 913 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 CDC25CP30307 473 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 SEMA3BQ13214 749 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 TIGD5Q53EQ6 642 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 SPDYAQ5MJ70 313 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 MARK2Q7KZI7 788 aaKnown RBP19.87■□□□□ 0.77
COL9A3-201ENST00000343916 HASPINQ8TF76 798 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 APBB2Q92870 758 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 APBA2Q99767 749 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 NMUR2Q9GZQ4 415 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 XPNPEP3Q9NQH7 507 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 NOP53Q9NZM5 478 aaKnown RBP19.87■□□□□ 0.77
COL9A3-201ENST00000343916 Q9Y3F1 56 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 RPS6KL1Q9Y6S9 549 aa19.87■□□□□ 0.77
COL9A3-201ENST00000343916 SF3B1O75533 1304 aaKnown RBP eCLIP19.87■□□□□ 0.778e-6■■■■■ 107
COL9A3-201ENST00000343916 E2F8A0AVK6 867 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 TRAFD1O14545 582 aaPredicted RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 BPGMP07738 259 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 ZNF157P51786 506 aaPredicted RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 OCRLQ01968 901 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 CYS1Q717R9 158 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 CDKL2Q92772 493 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 AGO3Q9H9G7 860 aaKnown RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 CNGB3Q9NQW8 809 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 NKX1-2Q9UD57 310 aaPredicted RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 LNPEPQ9UIQ6 1025 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 FBXW11Q9UKB1 542 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 TRPV2Q9Y5S1 764 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 HHLA1C9JL84 531 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 TNPO2O14787 897 aaKnown RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 FBXO21O94952 628 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 IL1BP01584 269 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 AKR1A1P14550 325 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 PDE1CQ14123 709 aaPredicted RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 RAB41Q5JT25 222 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 ATG16L1Q676U5 607 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 C17orf99Q6UX52 265 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 PTCD3Q96EY7 689 aaKnown RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 C7orf26Q96N11 449 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 FCRL3Q96P31 734 aaPredicted RBP19.86■□□□□ 0.77
COL9A3-201ENST00000343916 COLEC11Q9BWP8 271 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 IGSF9Q9P2J2 1179 aa19.86■□□□□ 0.77
COL9A3-201ENST00000343916 CTGFP29279 349 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 PPM1JQ5JR12 505 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 TIFABQ6ZNK6 161 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 BHLHA9Q7RTU4 235 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 RASSF3Q86WH2 238 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 TMEM86AQ8N2M4 240 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 ATXN7L3BQ96GX2 97 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 ZNF570Q96NI8 536 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 SLC9A7Q96T83 725 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 ZFATQ9P243 1243 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 FCHO1O14526 889 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 ZBTB24O43167 697 aaPredicted RBP19.85■□□□□ 0.77
COL9A3-201ENST00000343916 DNAJC6O75061 913 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 SKAP2O75563 359 aaPredicted RBP19.85■□□□□ 0.77
COL9A3-201ENST00000343916 GSRP00390 522 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 POMCP01189 267 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 MYCNP04198 464 aaPredicted RBP19.85■□□□□ 0.77
COL9A3-201ENST00000343916 ITGA2BP08514 1039 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 N4BP2L1Q5TBK1 243 aaPredicted RBP19.85■□□□□ 0.77
COL9A3-201ENST00000343916 NTAN1Q96AB6 310 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 APOL2Q9BQE5 337 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 RTP3Q9BQQ7 232 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 CADM1Q9BY67 442 aaKnown RBP19.85■□□□□ 0.77
COL9A3-201ENST00000343916 TKTL2Q9H0I9 626 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 EMCNQ9ULC0 261 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 SHROOM3Q8TF72 1996 aa19.85■□□□□ 0.77
COL9A3-201ENST00000343916 BDNFP23560 247 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 BRCC3P46736 316 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 RPL10AP62906 217 aaKnown RBP19.84■□□□□ 0.77
COL9A3-201ENST00000343916 PDE1BQ01064 536 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 ZBTB17Q13105 803 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 UPP1Q16831 310 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 TRIM42Q8IWZ5 723 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 MYLPFQ96A32 169 aa19.84■□□□□ 0.77
COL9A3-201ENST00000343916 SENP6Q9GZR1 1112 aaPredicted RBP19.84■□□□□ 0.77
COL9A3-201ENST00000343916 WDCPQ9H6R7 721 aa19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms