RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 POLG2Q9UHN1 485 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 MRPS7Q9Y2R9 242 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 HES2Q9Y543 173 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 PNMA8CA0A1B0GUJ8 204 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 RRN3P2A6NIE6 340 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CFAP99D6REC4 459 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 TOMM70O94826 608 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 GSNP06396 782 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 DBTP11182 482 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 CCDC130P13994 396 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 FDFT1P37268 417 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 FEN1P39748 380 aaKnown RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 TKTL1P51854 596 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 CHN2P52757 468 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 TAS2R40P59535 323 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 SLC1A5Q15758 541 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 LY6KQ17RY6 165 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 DUPD1Q68J44 220 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.87□□□□□ -0.99
RTN3-202ENST00000339997 OTOP1Q7RTM1 612 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 ECHDC2Q86YB7 292 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 BBS7Q8IWZ6 715 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 TTC39CQ8N584 583 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 VPS37AQ8NEZ2 397 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 HTR3CQ8WXA8 447 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 MRGBPQ9NV56 204 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 KIF20BQ96Q89 1820 aa8.87□□□□□ -0.99
RTN3-202ENST00000339997 FAM149AA5PLN7 773 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TULP2O00295 520 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TP73O15350 636 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 DSG3P32926 999 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 HALP42357 657 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 RAB14P61106 215 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ROR2Q01974 943 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 FOLH1Q04609 750 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 IER5Q5VY09 327 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ULK2Q8IYT8 1036 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 METTL6Q8TCB7 284 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 DENND2DQ9H6A0 471 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 PARVBQ9HBI1 364 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 PRMT7Q9NVM4 692 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 SYBUQ9NX95 663 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 C6orf203Q9P0P8 240 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 FAM25AB3EWG3 89 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 FAM25CB3EWG5 89 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 FAM25GB3EWG6 89 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 H3BN98 237 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 VWA5AO00534 786 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ASNA1O43681 348 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CYP7B1O75881 506 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ANXA9O76027 345 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ATP6V1C1P21283 382 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 GLRA2P23416 452 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 GPC1P35052 558 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 GRK3P35626 688 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TAF6P49848 677 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 NT5C2P49902 561 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 RAD23AP54725 363 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 EN1Q05925 392 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 STILQ15468 1287 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TRIP4Q15650 581 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 INAQ16352 499 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 PFKFB4Q16877 469 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 KHDC1Q4VXA5 237 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 AKIRIN2Q53H80 203 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 GNASQ5JWF2 1037 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 SPESP1Q6UW49 350 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ZCCHC9Q8N567 271 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 HAS1Q92839 578 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 RTFDC1Q9BY42 306 aaPredicted RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 MRPS26Q9BYN8 205 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 TRIM8Q9BZR9 551 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ALG9Q9H6U8 611 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 RIOX1Q9H6W3 641 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CATSPERBQ9H7T0 1116 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 RMI1Q9H9A7 625 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 SMPD4Q9NXE4 827 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 EIF3LQ9Y262 564 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 BTRCQ9Y297 605 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TDRKHQ9Y2W6 561 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 DPYSL4O14531 572 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 MAP3K13O43283 966 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CYP4B1P13584 511 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ALDH9A1P49189 494 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 NR1D2Q14995 579 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 Q4G0T1 1027 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 MTX3Q5HYI7 312 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 C16orf62Q7Z3J2 963 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 YTHDF3Q7Z739 585 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 CPNE8Q86YQ8 564 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 NARS2Q96I59 477 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 LGMNQ99538 433 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TSEN34Q9BSV6 310 aaKnown RBP8.86□□□□□ -0.99
RTN3-202ENST00000339997 HDHD2Q9H0R4 259 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 TPK1Q9H3S4 243 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 POMKQ9H5K3 350 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 CDHR5Q9HBB8 845 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 SNTG2Q9NY99 539 aa8.86□□□□□ -0.99
RTN3-202ENST00000339997 ERAP1Q9NZ08 941 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms