RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 C1orf54Q8WWF1 131 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 HSPH1Q92598 858 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 FAM136AQ96C01 138 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 BIRC8Q96P09 236 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CADM1Q9BY67 442 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 NIF3L1Q9GZT8 377 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CNTN6Q9UQ52 1028 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PIGRP01833 764 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TPSB2P20231 275 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CPA2P48052 419 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 LSAMPQ13449 338 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TPSAB1Q15661 275 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 SYNPOQ8N3V7 929 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 WDR36Q8NI36 951 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 RP9Q8TA86 221 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 CGRRF1Q99675 332 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 OSBPL11Q9BXB4 747 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ROGDIQ9GZN7 287 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ANKRD6Q9Y2G4 727 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PCDHB4Q9Y5E5 795 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 SNED1Q8TER0 1413 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 DENRO43583 198 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 BNIP3LO60238 219 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PIK3R1P27986 724 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PDHA2P29803 388 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 GPR1P46091 355 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 OLR1P78380 273 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 XKR3Q5GH77 459 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 FAM102BQ5T8I3 360 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 STK32CQ86UX6 486 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 LRRC47Q8N1G4 583 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 MARVELD2Q8N4S9 558 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 HPS1Q92902 700 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ATXN7L3BQ96GX2 97 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 C17orf80Q9BSJ5 609 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 DHRS4Q9BTZ2 278 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TRIM64CA6NLI5 447 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TPST1O60507 370 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 FYNP06241 537 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ALOX5P09917 674 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 COL6A2P12110 1019 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ARL3P36405 182 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CCNFP41002 786 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CYP24A1Q07973 514 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 KLF1Q13351 362 aaPredicted RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 TUBA3CQ13748 450 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 UBE2SQ16763 222 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 DEPTORQ8TB45 409 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 SKA1Q96BD8 255 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TADA1Q96BN2 335 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 BCL7BQ9BQE9 202 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 RUSC1Q9BVN2 902 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ADAM33Q9BZ11 813 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 LHX5Q9H2C1 402 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ZNF696Q9H7X3 374 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 IMPAD1Q9NX62 359 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 MARCOQ9UEW3 520 aaPredicted RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 ZNF112Q9UJU3 913 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 COL18A1P39060 1754 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 F5H6K3 240 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CYP26A1O43174 497 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TIMM44O43615 452 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TBC1D12O60347 775 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PTPN1P18031 435 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 GNA15P30679 374 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 MAGEA6P43360 314 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 GABRB2P47870 512 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 NR2C2P49116 596 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 EIF6P56537 245 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 MAMLD1Q13495 774 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 XKR9Q5GH70 373 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 MSANTD1Q6ZTZ1 278 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TTC30AQ86WT1 665 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 UNC5BQ8IZJ1 945 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ZNF420Q8TAQ5 688 aaPredicted RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 SLC4A9Q96Q91 983 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 SLC9A7Q96T83 725 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 RTKNQ9BST9 563 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 APOL6Q9BWW8 343 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 MRPL1Q9BYD6 325 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 TOR3AQ9H497 397 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 SYNDIG1Q9H7V2 258 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 POLD4Q9HCU8 107 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 EIF2B3Q9NR50 452 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 APPL1Q9UKG1 709 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 C5orf58C9J3I9 102 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PPEF1O14829 653 aaPredicted RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 IL18RAPO95256 599 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 MYL3P08590 195 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CDC25CP30307 473 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 SPRP35270 261 aaPredicted RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 RHAGQ02094 409 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 CUL2Q13617 745 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TNFAIP1Q13829 316 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 PERM1Q5SV97 790 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 ASB2Q96Q27 587 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 EFCAB1Q9HAE3 211 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 TAS2R1Q9NYW7 299 aa6.55□□□□□ -1.36
VPS35-201ENST00000299138 XPO7Q9UIA9 1087 aaKnown RBP6.55□□□□□ -1.36
VPS35-201ENST00000299138 TBX20Q9UMR3 447 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms