RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 CXCL17Q6UXB2 119 aa19.37■□□□□ 0.69
PTPRE-201ENST00000254667 VPS33AQ96AX1 596 aa19.37■□□□□ 0.69
PTPRE-201ENST00000254667 PGM2Q96G03 612 aa19.37■□□□□ 0.69
PTPRE-201ENST00000254667 RXFP1Q9HBX9 757 aa19.37■□□□□ 0.69
PTPRE-201ENST00000254667 SPG21Q9NZD8 308 aa19.37■□□□□ 0.69
PTPRE-201ENST00000254667 FZD1Q9UP38 647 aa19.37■□□□□ 0.69
PTPRE-201ENST00000254667 SLC9A3R1O14745 358 aaPredicted RBP19.36■□□□□ 0.69
PTPRE-201ENST00000254667 VAPBO95292 243 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 RPN2P04844 631 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 PTPN4P29074 926 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 SLC1A6P48664 564 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 CLK1P49759 484 aaKnown RBP19.36■□□□□ 0.69
PTPRE-201ENST00000254667 KRT78Q8N1N4 520 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 MCOLN3Q8TDD5 553 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 ZNF558Q96NG5 402 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 ZCWPW1Q9H0M4 648 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 NCANO14594 1321 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 M0R3G1 203 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 MMRN1Q13201 1228 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 RCN1Q15293 331 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 PGS1Q32NB8 556 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 ANKS6Q68DC2 871 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 KCND1Q9NSA2 647 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 E9PBE3 544 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 KLHL41O60662 606 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 RBL1P28749 1068 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 CYB5D1Q6P9G0 228 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 PHF13Q86YI8 300 aaPredicted RBP19.36■□□□□ 0.69
PTPRE-201ENST00000254667 CREG2Q8IUH2 290 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 OR56A4Q8NGH8 313 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 OSCP1Q8WVF1 389 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 SHC3Q92529 594 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 PAWRQ96IZ0 340 aaKnown RBP19.36■□□□□ 0.69
PTPRE-201ENST00000254667 OSGEPL1Q9H4B0 414 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 PARVBQ9HBI1 364 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 MRPL17Q9NRX2 175 aaKnown RBP19.36■□□□□ 0.69
PTPRE-201ENST00000254667 BCL9LQ86UU0 1499 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 H3BMM5 538 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 FKBP6O75344 327 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 HYIQ5T013 277 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 DEPDC1Q5TB30 811 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 ACOX2Q99424 681 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 IL22Q9GZX6 179 aa19.36■□□□□ 0.69
PTPRE-201ENST00000254667 COL1A2P08123 1366 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 A0A087X1B8 175 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 WTIPA6NIX2 430 aaPredicted RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 PSMA3P25788 255 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 MAPK8P45983 427 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 SCTRP47872 440 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 PLCL1Q15111 1095 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ANKRD52Q8NB46 1076 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 REPS1Q96D71 796 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 C2orf49Q9BVC5 232 aaPredicted RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 NFKBIZQ9BYH8 718 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 RAD18Q9NS91 495 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ROBO3Q96MS0 1386 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ASTN2O75129 1339 aaPredicted RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 TRUB2O95900 331 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ERVK-10P10266 1014 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 TKTP29401 623 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 SERPINA4P29622 427 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 MIIPQ5JXC2 388 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 KYAT3Q6YP21 454 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 OR12D3Q9UGF7 316 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 VPS51Q9UID3 782 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 PTCH2Q9Y6C5 1203 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 A0A0A0MRY4 1105 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 CCNT2O60583 730 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ZNF23P17027 643 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ITGB5P18084 799 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 RGMBQ6NW40 437 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 LRRC52Q8N7C0 313 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 TCP10LQ8TDR4 215 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ELMO3Q96BJ8 720 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 SPATA13Q96N96 652 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 EXOSC4Q9NPD3 245 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ETNK2Q9NVF9 386 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 STK39Q9UEW8 545 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ZNF229Q9UJW7 825 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 TPST1O60507 370 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 SSTR1P30872 391 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 TRPC1P48995 793 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 SERPINH1P50454 418 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 SP3Q02447 781 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 KPNB1Q14974 876 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 ADRM1Q16186 407 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 AENQ8WTP8 325 aaKnown RBP19.35■□□□□ 0.69
PTPRE-201ENST00000254667 DCLRE1BQ9H816 532 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 GIT1Q9Y2X7 761 aa19.35■□□□□ 0.69
PTPRE-201ENST00000254667 TSHRP16473 764 aa19.34■□□□□ 0.69
PTPRE-201ENST00000254667 GRM5P41594 1212 aa19.34■□□□□ 0.69
PTPRE-201ENST00000254667 MSLNQ13421 630 aaPredicted RBP19.34■□□□□ 0.69
PTPRE-201ENST00000254667 PSTKQ8IV42 348 aaKnown RBP19.34■□□□□ 0.69
PTPRE-201ENST00000254667 C12orf56Q8IXR9 622 aa19.34■□□□□ 0.69
PTPRE-201ENST00000254667 MIEF1Q9NQG6 463 aa19.34■□□□□ 0.69
PTPRE-201ENST00000254667 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.34■□□□□ 0.69
PTPRE-201ENST00000254667 ZNF839A8K0R7 811 aa19.34■□□□□ 0.69
PTPRE-201ENST00000254667 ZACNQ401N2 412 aa19.34■□□□□ 0.69
PTPRE-201ENST00000254667 AGKQ53H12 422 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms