RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 GVINP1Q7Z2Y8 2422 aa3.66□□□□□ -1.82
SCN1A-221ENST00000641996 URADA6NGE7 173 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 WASHC1A8K0Z3 465 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 WASH3PC4AMC7 463 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PLOD2O00469 737 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 EIF3HO15372 352 aaKnown RBP eCLIP3.65□□□□□ -1.826e-7■■■■□ 20.9
SCN1A-221ENST00000641996 IL1AP01583 271 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 C6P13671 934 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SOX6P35712 828 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SLC15A1P46059 708 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PIP4K2AP48426 406 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CDKL4Q5MAI5 379 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 VHLLQ6RSH7 139 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 WASH2PQ6VEQ5 465 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CENPUQ71F23 418 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ERASQ7Z444 233 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 LSMEM1Q8N8F7 131 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 KCNE4Q8WWG9 221 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 BSCL2Q96G97 398 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 NAPGQ99747 312 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PAPOLGQ9BWT3 736 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 UNKLQ9H9P5 680 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SNX24Q9Y343 169 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 USP17L5A8MUK1 530 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 H3BMM5 538 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 FBP2O00757 339 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 TRAPPC3O43617 180 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 NRP2O60462 931 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PRKD3O94806 890 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 APOL3O95236 402 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PRKCBP05771 671 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 IL10P22301 178 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 RPA1P27694 616 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CYP2A13Q16696 494 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 FAM26DQ5JW98 314 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 HES5Q5TA89 166 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 RFPL4BQ6ZWI9 263 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SULF1Q8IWU6 871 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 TIGD4Q8IY51 512 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PRSS58Q8IYP2 241 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CELF2-AS1Q8N7Q2 184 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 AGAP11Q8TF27 550 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SLC20A1Q8WUM9 679 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 REXO5Q96IC2 774 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ACTL8Q9H568 366 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 JMJD4Q9H9V9 463 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 GULP1Q9UBP9 304 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 GNEQ9Y223 722 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 HYOU1Q9Y4L1 999 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 H7C1W4 665 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ATP6V1G2O95670 118 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ACAA2P42765 397 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ATP12AP54707 1039 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ESRRGP62508 458 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 GCNT1Q02742 428 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 UBXN11Q5T124 520 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC71Q8IV32 467 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 KIAA0319LQ8IZA0 1049 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 U2AF1L4Q8WU68 220 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 AGAP1Q9UPQ3 857 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 YLPM1P49750 1951 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 DOCK6Q96HP0 2047 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 HEATR9A2RTY3 570 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM221A6NGB7 291 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 A8MUA0 341 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 KPNA7A9QM74 516 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SAT1P21673 171 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PSMA2P25787 234 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SQSTM1Q13501 440 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 HACD4Q5VWC8 232 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 DENND2CQ68D51 928 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PLA2G4FQ68DD2 849 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 THNSL1Q8IYQ7 743 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 MPP5Q8N3R9 675 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 NR4A3Q92570 626 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CCNL2Q96S94 520 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 KCNH6Q9H252 994 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC59Q9P031 241 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CA5BQ9Y2D0 317 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 MED13LQ71F56 2210 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 C2orf16Q68DN1 1984 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ANKRD30AQ9BXX3 1397 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 UGT1A1P22309 533 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PPP2R1AP30153 589 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 DHPSP49366 369 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 BDH1Q02338 343 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 LIPEQ05469 1076 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 EMC2Q15006 297 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 KLHDC7AQ5VTJ3 777 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SIGIRRQ6IA17 410 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 ERICH1Q86X53 443 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PSTKQ8IV42 348 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 BBS1Q8NFJ9 593 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 DDX17Q92841 729 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 EXOSC8Q96B26 276 aaKnown RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 CPNE2Q96FN4 548 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SH2B1Q9NRF2 756 aaPredicted RBP3.65□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHB10Q9UN67 800 aa3.65□□□□□ -1.82
SCN1A-221ENST00000641996 SH3TC1Q8TE82 1336 aa3.65□□□□□ -1.83
SCN1A-221ENST00000641996 RSF1Q96T23 1441 aaPredicted RBP3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms