RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 ATP11AP98196 1134 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 RABGAP1LQ5R372 815 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 SDE2Q6IQ49 451 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 DCUN1D2Q6PH85 259 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 DRC7Q8IY82 874 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 TXNDC5Q8NBS9 432 aaKnown RBP21.43■■□□□ 1.02
CLN3-240ENST00000631023 OR8K1Q8NGG5 319 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 JOSD2Q8TAC2 188 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 OLIG1Q8TAK6 271 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 NELL1Q92832 810 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 ADAM33Q9BZ11 813 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 RBSNQ9H1K0 784 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 ADAMTS1Q9UHI8 967 aa21.43■■□□□ 1.02
CLN3-240ENST00000631023 ENDOD1O94919 500 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 TDGF1P13385 188 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 DESP17661 470 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 GPD1P21695 349 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 RRM1P23921 792 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 HNRNPH3P31942 346 aaKnown RBP21.42■■□□□ 1.02
CLN3-240ENST00000631023 NBL1P41271 181 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 EIF4HQ15056 248 aaKnown RBP21.42■■□□□ 1.02
CLN3-240ENST00000631023 GEN1Q17RS7 908 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 CCDC14Q49A88 953 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 TTC39BQ5VTQ0 682 aaPredicted RBP21.42■■□□□ 1.02
CLN3-240ENST00000631023 RNF43Q68DV7 783 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 WDR59Q6PJI9 974 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 BNIPLQ7Z465 357 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 MFN1Q8IWA4 741 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 CFAP52Q8N1V2 620 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 WFIKKN2Q8TEU8 576 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 TRIM11Q96F44 468 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 PRICKLE1Q96MT3 831 aaPredicted RBP21.42■■□□□ 1.02
CLN3-240ENST00000631023 PRMT1Q99873 361 aaKnown RBP21.42■■□□□ 1.02
CLN3-240ENST00000631023 PARVAQ9NVD7 372 aa21.42■■□□□ 1.02
CLN3-240ENST00000631023 ZNHIT6Q9NWK9 470 aaKnown RBP21.42■■□□□ 1.02
CLN3-240ENST00000631023 TCRBV5S1A1TA0A578 114 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 NPC1O15118 1278 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 GJB6O95452 261 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 ADCY5O95622 1261 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 CDH18Q13634 790 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 CDO1Q16878 200 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 STRADAQ7RTN6 431 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 ZBTB44Q8NCP5 570 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 FIBINQ8TAL6 211 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 SIK2Q9H0K1 926 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 ABCB8Q9NUT2 735 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 ELOVL2Q9NXB9 296 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 EML5Q05BV3 1969 aa21.41■■□□□ 1.02
CLN3-240ENST00000631023 ANTXRLA6NF34 631 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 HLA-FP30511 346 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 NTSR1P30989 418 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 PLA2G5P39877 138 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 DGKEP52429 567 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 AUHQ13825 339 aaKnown RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 CRY1Q16526 586 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 ARL13BQ3SXY8 428 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 FBXL22Q6P050 247 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 CHPFQ8IZ52 775 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 AHI1Q8N157 1196 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 CARNMT1Q8N4J0 409 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 C1orf74Q96LT6 269 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 MCEEQ96PE7 176 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 HAPLN3Q96S86 360 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 ISCUQ9H1K1 167 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 SEMA4AQ9H3S1 761 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 HS3ST4Q9Y661 456 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 VPS13AQ96RL7 3174 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 CCDC163A0A0D9SF12 145 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 H0Y626 953 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 SGK1O00141 431 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 LUC7L3O95232 432 aaKnown RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 APBB3O95704 486 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 MYBL1P10243 752 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 CHRM1P11229 460 aaPredicted RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 PABPC1P11940 636 aaKnown RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 HNRNPLP14866 589 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLN3-240ENST00000631023 ZNF143P52747 638 aaPredicted RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 C15orf59Q2T9L4 293 aaPredicted RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 PPP1R15BQ5SWA1 713 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 EGFLAMQ63HQ2 1017 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 HEATR6Q6AI08 1181 aaKnown RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 PLEKHA7Q6IQ23 1121 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 LRRC31Q6UY01 552 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 FAM131BQ86XD5 332 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 DDX51Q8N8A6 666 aaKnown RBP eCLIP21.4■■□□□ 1.02
CLN3-240ENST00000631023 TSTD1Q8NFU3 115 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 CENPIQ92674 756 aaPredicted RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 MYEOVQ96EZ4 313 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 RPRD1AQ96P16 312 aaPredicted RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 DNAJC7Q99615 494 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 CIPCQ9C0C6 399 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 POLMQ9NP87 494 aaPredicted RBP21.4■■□□□ 1.02
CLN3-240ENST00000631023 GGA2Q9UJY4 613 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 VANGL2Q9ULK5 521 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 R4GN57 208 aa21.4■■□□□ 1.02
CLN3-240ENST00000631023 ALDH1A2O94788 518 aa21.39■■□□□ 1.01
CLN3-240ENST00000631023 PLEKP08567 350 aaPredicted RBP21.39■■□□□ 1.01
CLN3-240ENST00000631023 ATXN1P54253 815 aaKnown RBP21.39■■□□□ 1.01
CLN3-240ENST00000631023 RPL7AP62424 266 aaKnown RBP21.39■■□□□ 1.01
CLN3-240ENST00000631023 MAMLD1Q13495 774 aa21.39■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms