RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SUZ12Q15022 739 aaKnown RBP12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MBLAC2Q68D91 279 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 ZNF776Q68DI1 518 aaPredicted RBP12.38□□□□□ -0.43
UPF3B-204ENST00000619445 USP30Q70CQ3 517 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 ADIPOR2Q86V24 386 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MFN1Q8IWA4 741 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 FIBINQ8TAL6 211 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 LMO3Q8TAP4 145 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MED15Q96RN5 788 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 PPP1R9BQ96SB3 815 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 BTBD1Q9H0C5 482 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 MIR1-1HGQ9H1L0 117 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 SGK2Q9HBY8 427 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 SLC12A6Q9UHW9 1150 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 APOBEC2Q9Y235 224 aaKnown RBP12.38□□□□□ -0.43
UPF3B-204ENST00000619445 NCKAP1Q9Y2A7 1128 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 PCDHGB2Q9Y5G2 931 aa12.38□□□□□ -0.43
UPF3B-204ENST00000619445 FRYQ5TBA9 3013 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 FAM221BA6H8Z2 402 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 KCNJ18B7U540 433 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 PPP1R3GB7ZBB8 358 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 CAPN9O14815 690 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 TBL1XO60907 577 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 SLC2A3P11169 496 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 CD44P16070 742 aaKnown RBP12.37□□□□□ -0.43
UPF3B-204ENST00000619445 BRD2P25440 801 aaKnown RBP12.37□□□□□ -0.43
UPF3B-204ENST00000619445 OXCT1P55809 520 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 CDH18Q13634 790 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 ARID5BQ14865 1188 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 TRIP6Q15654 476 aaKnown RBP12.37□□□□□ -0.43
UPF3B-204ENST00000619445 FAM133BQ5BKY9 247 aaKnown RBP12.37□□□□□ -0.43
UPF3B-204ENST00000619445 RRAGAQ7L523 313 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 NAXDQ8IW45 347 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 ZCCHC9Q8N567 271 aaKnown RBP12.37□□□□□ -0.43
UPF3B-204ENST00000619445 SORCS1Q8WY21 1168 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 ERCC4Q92889 916 aaPredicted RBP12.37□□□□□ -0.43
UPF3B-204ENST00000619445 TTC17Q96AE7 1141 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 FAM149B1Q96BN6 582 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 ERLEC1Q96DZ1 483 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 ST7Q9NRC1 585 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 TMEM51Q9NW97 253 aa12.37□□□□□ -0.43
UPF3B-204ENST00000619445 PKD1L2Q7Z442 2459 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 NUMA1Q14980 2115 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 MUC22E2RYF6 1773 aaPredicted RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SPAARA0A1B0GVQ0 90 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 RNF225M0QZC1 329 aaPredicted RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 FLRT2O43155 660 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 DFNA5O60443 496 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SEMA4FO95754 770 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SRPRAP08240 638 aaKnown RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 KRT5P13647 590 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 MAOBP27338 520 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 GPD2P43304 727 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 GRIA4P48058 902 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SLC12A1Q13621 1099 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 TTC39BQ5VTQ0 682 aaPredicted RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 ISM2Q6H9L7 571 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 GLRX5Q86SX6 157 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 DQX1Q8TE96 717 aaKnown RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 CYB5D2Q8WUJ1 264 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 GATA6Q92908 595 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SKA1Q96BD8 255 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 BTN2A3PQ96KV6 586 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 NOX5Q96PH1 765 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 CDC6Q99741 560 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SRRTQ9BXP5 876 aaKnown RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 SLC4A5Q9BY07 1137 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 MIS12Q9H081 205 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 INTS2Q9H0H0 1204 aaKnown RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 THAP9Q9H5L6 903 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 POPDC2Q9HBU9 364 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 CD93Q9NPY3 652 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 PRSS16Q9NQE7 514 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 FSCN3Q9NQT6 498 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 KIAA1522Q9P206 1035 aaPredicted RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 TJP2Q9UDY2 1190 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 EIF2B4Q9UI10 523 aaKnown RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 CTNND2Q9UQB3 1225 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.36□□□□□ -0.43
UPF3B-204ENST00000619445 GTF3C3Q9Y5Q9 886 aa12.36□□□□□ -0.43
UPF3B-204ENST00000619445 ACACAQ13085 2346 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 TARSL2A2RTX5 802 aaKnown RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 C1QTNF9BB2RNN3 333 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 SH3BP5O60239 455 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 GLI1P08151 1106 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 C1QTNF9P0C862 333 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 HLA-EP13747 358 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 CD27P26842 260 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 NNMTP40261 264 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 RPS14P62263 151 aaKnown RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 YWHAZP63104 245 aaKnown RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 SULT2A1Q06520 285 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 PTPRNQ16849 979 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 HNRNPA1L2Q32P51 320 aaKnown RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 INAVAQ3KP66 663 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 MS4A13Q5J8X5 152 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 RNF219Q5W0B1 726 aaPredicted RBP12.35□□□□□ -0.43
UPF3B-204ENST00000619445 RFWD3Q6PCD5 774 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 LRSAM1Q6UWE0 723 aa12.35□□□□□ -0.43
UPF3B-204ENST00000619445 RAB44Q7Z6P3 723 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms