RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 EIF4EBP2Q13542 120 aaPredicted RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 SIM2Q14190 667 aaPredicted RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 GEN1Q17RS7 908 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 USP39Q53GS9 565 aaKnown RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 NADSYN1Q6IA69 706 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 DNAJC24Q6P3W2 148 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 DCUN1D2Q6PH85 259 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 PRR23BQ6ZRT6 265 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 RNF214Q8ND24 703 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 C3orf20Q8ND61 904 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 SYN2Q92777 582 aaPredicted RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 RPRD1AQ96P16 312 aaPredicted RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 PCDHB18PQ96TA0 734 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 XPO4Q9C0E2 1151 aaKnown RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 TKTL2Q9H0I9 626 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 KIAA1522Q9P206 1035 aaPredicted RBP20.03■□□□□ 0.8
UPF1-212ENST00000601689 GGA2Q9UJY4 613 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 TMEM59LQ9UK28 342 aa20.03■□□□□ 0.8
UPF1-212ENST00000601689 SGK1O00141 431 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 SYNCRIPO60506 623 aaKnown RBP20.02■□□□□ 0.8
UPF1-212ENST00000601689 GZMAP12544 262 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 FLT3P36888 993 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 CXCR3P49682 368 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 PITX1P78337 314 aaPredicted RBP20.02■□□□□ 0.8
UPF1-212ENST00000601689 MESP2Q0VG99 397 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 EGFLAMQ63HQ2 1017 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 ANO7Q6IWH7 933 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 CHST9Q7L1S5 443 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 SFTPA1Q8IWL2 248 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 FIBINQ8TAL6 211 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 NT5C3BQ969T7 300 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 TRIM11Q96F44 468 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 CFAP57Q96MR6 1250 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 TBCBQ99426 244 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 PHOX2BQ99453 314 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 TTYH3Q9C0H2 523 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 SIK2Q9H0K1 926 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 ABCB8Q9NUT2 735 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 C2orf42Q9NWW7 574 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 GMEB2Q9UKD1 530 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 CAPN11Q9UMQ6 739 aa20.02■□□□□ 0.8
UPF1-212ENST00000601689 A0A1B0GVM2 712 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 TCAF2A6NFQ2 919 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 RPP40O75818 363 aaKnown RBP20.01■□□□□ 0.79
UPF1-212ENST00000601689 LUC7L3O95232 432 aaKnown RBP20.01■□□□□ 0.79
UPF1-212ENST00000601689 PBX1P40424 430 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 PXNP49023 591 aaPredicted RBP20.01■□□□□ 0.79
UPF1-212ENST00000601689 ST8SIA6P61647 398 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 RPS24P62847 133 aaKnown RBP20.01■□□□□ 0.79
UPF1-212ENST00000601689 ATP11AP98196 1134 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 SLC12A1Q13621 1099 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 GAB3Q8WWW8 586 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 RXFP2Q8WXD0 754 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 SPACA7Q96KW9 195 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.01■□□□□ 0.79
UPF1-212ENST00000601689 EPC1Q9H2F5 836 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 PIGVQ9NUD9 493 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 ZNHIT6Q9NWK9 470 aaKnown RBP20.01■□□□□ 0.79
UPF1-212ENST00000601689 ARHGEF38Q9NXL2 777 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 NCDNQ9UBB6 729 aa20.01■□□□□ 0.79
UPF1-212ENST00000601689 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20■□□□□ 0.79
UPF1-212ENST00000601689 TCRBV21S2A2A0A5A6 115 aa20■□□□□ 0.79
UPF1-212ENST00000601689 PRR23AA6NEV1 266 aa20■□□□□ 0.79
UPF1-212ENST00000601689 SIGLEC16A6NMB1 481 aa20■□□□□ 0.79
UPF1-212ENST00000601689 TMCO5BA8MYB1 307 aa20■□□□□ 0.79
UPF1-212ENST00000601689 PAGE1O75459 146 aa20■□□□□ 0.79
UPF1-212ENST00000601689 SERPING1P05155 500 aa20■□□□□ 0.79
UPF1-212ENST00000601689 GPD1P21695 349 aa20■□□□□ 0.79
UPF1-212ENST00000601689 HLA-FP30511 346 aa20■□□□□ 0.79
UPF1-212ENST00000601689 NNMTP40261 264 aa20■□□□□ 0.79
UPF1-212ENST00000601689 WASP42768 502 aa20■□□□□ 0.79
UPF1-212ENST00000601689 ZNF177Q13360 481 aaPredicted RBP20■□□□□ 0.79
UPF1-212ENST00000601689 CDO1Q16878 200 aa20■□□□□ 0.79
UPF1-212ENST00000601689 SPECC1LQ69YQ0 1117 aa20■□□□□ 0.79
UPF1-212ENST00000601689 SERPINA13PQ6UXR4 307 aa20■□□□□ 0.79
UPF1-212ENST00000601689 MON1BQ7L1V2 547 aa20■□□□□ 0.79
UPF1-212ENST00000601689 STRADAQ7RTN6 431 aa20■□□□□ 0.79
UPF1-212ENST00000601689 PHLDB2Q86SQ0 1253 aa20■□□□□ 0.79
UPF1-212ENST00000601689 MCOLN2Q8IZK6 566 aa20■□□□□ 0.79
UPF1-212ENST00000601689 CFAP52Q8N1V2 620 aa20■□□□□ 0.79
UPF1-212ENST00000601689 EMC1Q8N766 993 aa20■□□□□ 0.79
UPF1-212ENST00000601689 DDX51Q8N8A6 666 aaKnown RBP eCLIP20■□□□□ 0.79
UPF1-212ENST00000601689 HAPLN3Q96S86 360 aa20■□□□□ 0.79
UPF1-212ENST00000601689 ANP32EQ9BTT0 268 aa20■□□□□ 0.79
UPF1-212ENST00000601689 PARVAQ9NVD7 372 aa20■□□□□ 0.79
UPF1-212ENST00000601689 THAP10Q9P2Z0 257 aaPredicted RBP20■□□□□ 0.79
UPF1-212ENST00000601689 XPO7Q9UIA9 1087 aaKnown RBP20■□□□□ 0.79
UPF1-212ENST00000601689 VANGL2Q9ULK5 521 aa20■□□□□ 0.79
UPF1-212ENST00000601689 STON1Q9Y6Q2 735 aa20■□□□□ 0.79
UPF1-212ENST00000601689 RTN2O75298 545 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 ASLP04424 464 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 PTPN9P43378 593 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 SGSHP51688 502 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 DMWDQ09019 674 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 AUHQ13825 339 aaKnown RBP19.99■□□□□ 0.79
UPF1-212ENST00000601689 FNDC3BQ53EP0 1204 aaKnown RBP19.99■□□□□ 0.79
UPF1-212ENST00000601689 RNF219Q5W0B1 726 aaPredicted RBP19.99■□□□□ 0.79
UPF1-212ENST00000601689 MBLAC2Q68D91 279 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 TMEM92Q6UXU6 159 aa19.99■□□□□ 0.79
UPF1-212ENST00000601689 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms