RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 URB1O60287 2271 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 TULP2O00295 520 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 PSMA7O14818 248 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 TNFSF14O43557 240 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 PCDHGA12O60330 932 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 DFNA5O60443 496 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 TSPAN3O60637 253 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SEMA4FO95754 770 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 DNTTP04053 509 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 DLDP09622 509 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 ATXN1LP0C7T5 689 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 PABPC1P11940 636 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 CD27P26842 260 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 BST2Q10589 180 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 PTPRNQ16849 979 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 GOLGA7BQ2TAP0 167 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SGO2Q562F6 1265 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 MBLAC2Q68D91 279 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 KLHL10Q6JEL2 608 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 CACUL1Q86Y37 369 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 ZNF557Q8N988 423 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 MDM1Q8TC05 714 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 CYB5D2Q8WUJ1 264 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 NELFBQ8WX92 580 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 NDRG1Q92597 394 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 BIRC7Q96CA5 298 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 GTPBP4Q9BZE4 634 aaKnown RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SGK2Q9HBY8 427 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SCUBE2Q9NQ36 999 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 CNGB3Q9NQW8 809 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 ABCB8Q9NUT2 735 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 ARMCX3Q9UH62 379 aaPredicted RBP13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SFMBT1Q9UHJ3 866 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 GGA2Q9UJY4 613 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 TSPAN16Q9UKR8 245 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 KIAA1257Q9ULG3 409 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SCML1Q9UN30 329 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 SLCO1B1Q9Y6L6 691 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 KNTC1P50748 2209 aa13.03□□□□□ -0.32
TRIM28-212ENST00000597995 LAMA5O15230 3695 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 YJEFN3A6XGL0 299 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 E7ENQ6 273 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 IRAK2O43187 625 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 PAPSS1O43252 624 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-212ENST00000597995 SETSIPP0DME0 302 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 VDRP11473 427 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 GRK6P43250 576 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 CCT8P50990 548 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 YWHAEP62258 255 aaKnown RBP13.02□□□□□ -0.33
TRIM28-212ENST00000597995 ADIGQ0VDE8 80 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 COL28A1Q2UY09 1125 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 TTC31Q49AM3 519 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-212ENST00000597995 SOWAHCQ53LP3 525 aaPredicted RBP13.02□□□□□ -0.33
TRIM28-212ENST00000597995 MSANTD2Q6P1R3 559 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 UBR7Q8N806 425 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 LMO3Q8TAP4 145 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 EDEM1Q92611 657 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 AZIN2Q96A70 460 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 CEP63Q96MT8 703 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 MED15Q96RN5 788 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 CHMP5Q9NZZ3 219 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.02□□□□□ -0.33
TRIM28-212ENST00000597995 CTNND2Q9UQB3 1225 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 BTBD3Q9Y2F9 522 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 RAXQ9Y2V3 346 aa13.02□□□□□ -0.33
TRIM28-212ENST00000597995 TRABD2BA6NFA1 517 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 E9PAM4 449 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 IGLV3-27P01718 113 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 POLR2EP19388 210 aaKnown RBP13.01□□□□□ -0.33
TRIM28-212ENST00000597995 CTSKP43235 329 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 SLC11A2P49281 568 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 FMO5P49326 533 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 STX17P56962 302 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 SFSWAPQ12872 951 aaKnown RBP13.01□□□□□ -0.33
TRIM28-212ENST00000597995 LRMPQ12912 555 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 STIM1Q13586 685 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 CUL2Q13617 745 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 SMAD1Q15797 465 aaKnown RBP13.01□□□□□ -0.33
TRIM28-212ENST00000597995 INAVAQ3KP66 663 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 PKDCCQ504Y2 493 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 PIK3R6Q5UE93 754 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 ZNF776Q68DI1 518 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-212ENST00000597995 FOXR2Q6PJQ5 311 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 USP30Q70CQ3 517 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 UNC45BQ8IWX7 931 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 SIX6OS1Q8N1H7 587 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 ZNF366Q8N895 744 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 IRGQQ8WZA9 623 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 ORAI3Q9BRQ5 295 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 RSPH9Q9H1X1 276 aaPredicted RBP13.01□□□□□ -0.33
TRIM28-212ENST00000597995 METTL14Q9HCE5 456 aaKnown RBP13.01□□□□□ -0.33
TRIM28-212ENST00000597995 NCKAP1Q9Y2A7 1128 aa13.01□□□□□ -0.33
TRIM28-212ENST00000597995 MUC22E2RYF6 1773 aaPredicted RBP13□□□□□ -0.33
TRIM28-212ENST00000597995 H0Y8X5 98 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 O00370 1275 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 VILLO15195 856 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 PMM2O15305 246 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 TBL1XO60907 577 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 FSBPO95073 299 aa13□□□□□ -0.33
TRIM28-212ENST00000597995 CD19P15391 556 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms