RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TIAM2Q8IVF5 1701 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 HAS3O00219 553 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 LRPAP1P30533 357 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ITGA8P53708 1063 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 MPPE1Q53F39 396 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 DNAJB7Q7Z6W7 309 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 CCNJLQ8IV13 435 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 ACTRT1Q8TDG2 376 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 SKA1Q96BD8 255 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 FCRL2Q96LA5 508 aaPredicted RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 C9orf72Q96LT7 481 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 NAT9Q9BTE0 207 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 SYNDIG1Q9H7V2 258 aa10.1□□□□□ -0.79
LIG3-216ENST00000593099 TSR3Q9UJK0 312 aaKnown RBP10.1□□□□□ -0.79
LIG3-216ENST00000593099 OPHN1O60890 802 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 ASPAP45381 313 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 MMP13P45452 471 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 MAPK8P45983 427 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 SNRPD1P62314 119 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 PDE12Q6L8Q7 609 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 PMF1Q6P1K2 205 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 RNF135Q8IUD6 432 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 CRYBG2Q8N1P7 616 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 COLGALT1Q8NBJ5 622 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 LPCAT1Q8NF37 534 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 DQX1Q8TE96 717 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 TRIM63Q969Q1 353 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 ATXN7L3BQ96GX2 97 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 PPP1R16AQ96I34 528 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 CABS1Q96KC9 395 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 TMEM121Q9BTD3 319 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 DRC3Q9H069 523 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 MRPL42Q9Y6G3 142 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 PAPPA2Q9BXP8 1791 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 KCNK1O00180 336 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 TRDMT1O14717 391 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 PPEF2O14830 753 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 RB1P06400 928 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 SERPINA4P29622 427 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 GGCXP38435 758 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 NRIP1P48552 1158 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 STX1BP61266 288 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 RPL7AP62424 266 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 B4GALNT4Q76KP1 1039 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 TRMT10CQ7L0Y3 403 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 NT5DC3Q86UY8 548 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 KLHL23Q8NBE8 558 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 ABTB1Q969K4 478 aaPredicted RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 HBS1LQ9Y450 684 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 GOLGA8QA0A0J9YX86 632 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 GOLGA8OA6NCC3 632 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 GOLGA8NF8WBI6 632 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 APOC4-APOC2K7ER74 178 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 KDM1AO60341 852 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 APOC2P02655 101 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 CORO1AP31146 461 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 SPRP35270 261 aaPredicted RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 SERPINB9P50453 376 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 GPR17Q13304 367 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 ZNF280BQ86YH2 543 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 CHPFQ8IZ52 775 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 ARL14EPQ8N8R7 260 aaPredicted RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 DIS3LQ8TF46 1054 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 APOL2Q9BQE5 337 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 FAM129AQ9BZQ8 928 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 POLR1EQ9GZS1 481 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 CNOT10Q9H9A5 744 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 GEMIN8Q9NWZ8 242 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 MRPS17Q9Y2R5 130 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 FIS1Q9Y3D6 152 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 MDM4O15151 490 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 PAGE1O75459 146 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 ADRA1BP35368 520 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 SF3A3Q12874 501 aaKnown RBP eCLIP10.09□□□□□ -0.79
LIG3-216ENST00000593099 CCDC85BQ15834 202 aaPredicted RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 ATG16L1Q676U5 607 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 TAS1R3Q7RTX0 852 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 HS6ST3Q8IZP7 471 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 SMG8Q8ND04 991 aaKnown RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 ZNF461Q8TAF7 563 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 TMEM40Q8WWA1 233 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 TFAP2BQ92481 460 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 LRRC40Q9H9A6 602 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 KIAA1522Q9P206 1035 aaPredicted RBP10.09□□□□□ -0.79
LIG3-216ENST00000593099 CPQQ9Y646 472 aa10.09□□□□□ -0.79
LIG3-216ENST00000593099 SDR42E2A6NKP2 422 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 C9IYK1 514 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 C1QTNF3-AMACRE9PGA6 284 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 PEX14O75381 377 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 CLDN11O75508 207 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 APODP05090 189 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 PYGMP11217 842 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 DAOAP59103 153 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 GNGT1P63211 74 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 MOGSQ13724 837 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 TTLL9Q3SXZ7 439 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 ARMC12Q5T9G4 340 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 PAPD7Q5XG87 772 aaKnown RBP10.08□□□□□ -0.8
LIG3-216ENST00000593099 FBXL19Q6PCT2 694 aa10.08□□□□□ -0.8
LIG3-216ENST00000593099 CACUL1Q86Y37 369 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms