RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 ADIPOR2Q86V24 386 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 RASSF3Q86WH2 238 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 CIR1Q86X95 450 aaPredicted RBP20.84■□□□□ 0.93
SS18-218ENST00000581021 DNAAF5Q86Y56 855 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.84■□□□□ 0.93
SS18-218ENST00000581021 RNF214Q8ND24 703 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 PGAP3Q96FM1 320 aaPredicted RBP20.84■□□□□ 0.93
SS18-218ENST00000581021 XPO4Q9C0E2 1151 aaKnown RBP20.84■□□□□ 0.93
SS18-218ENST00000581021 SEMA4AQ9H3S1 761 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 ADAM22Q9P0K1 906 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 EBF1Q9UH73 591 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 SMG5Q9UPR3 1016 aaKnown RBP20.84■□□□□ 0.93
SS18-218ENST00000581021 SNX10Q9Y5X0 201 aa20.84■□□□□ 0.93
SS18-218ENST00000581021 CCDC163A0A0D9SF12 145 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 PAGE1O75459 146 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 NTSR1P30989 418 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 GBP1P32455 592 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 PRKCIP41743 596 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 DGKEP52429 567 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 GSCP56915 257 aaPredicted RBP20.83■□□□□ 0.93
SS18-218ENST00000581021 LPAL2Q16609 132 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 FSCBQ5H9T9 825 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 EOGTQ5NDL2 527 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 SH3PXD2AQ5TCZ1 1133 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 SFMBT2Q5VUG0 894 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 ARCQ7LC44 396 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 C14orf80Q86SX3 495 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 GABRG3Q99928 467 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 IRX2Q9BZI1 471 aaPredicted RBP20.83■□□□□ 0.93
SS18-218ENST00000581021 TPSD1Q9BZJ3 242 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 EDEM3Q9BZQ6 932 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 HAUS4Q9H6D7 363 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 ELOVL2Q9NXB9 296 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 ARHGEF38Q9NXL2 777 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 GGA2Q9UJY4 613 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 STAP1Q9ULZ2 295 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 RAD54BQ9Y620 910 aa20.83■□□□□ 0.93
SS18-218ENST00000581021 CFAP54Q96N23 3096 aa20.83■□□□□ 0.92
SS18-218ENST00000581021 C2CD4BA6NLJ0 364 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 AXIN1O15169 862 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 SLC2A3P11169 496 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 SKILP12757 684 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 HOXB2P14652 356 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 IL12RB1P42701 662 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 LMAN2Q12907 356 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 ENPP2Q13822 863 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 FUT11Q495W5 492 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 HGSNATQ68CP4 663 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 FBXL22Q6P050 247 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 NUDT18Q6ZVK8 323 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 CHPFQ8IZ52 775 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 ATP6V0D2Q8N8Y2 350 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 RNF34Q969K3 372 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 IGSF8Q969P0 613 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 DDX50Q9BQ39 737 aaKnown RBP20.82■□□□□ 0.92
SS18-218ENST00000581021 RRN3Q9NYV6 651 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 THAP10Q9P2Z0 257 aaPredicted RBP20.82■□□□□ 0.92
SS18-218ENST00000581021 INTS6Q9UL03 887 aaKnown RBP20.82■□□□□ 0.92
SS18-218ENST00000581021 HS3ST4Q9Y661 456 aa20.82■□□□□ 0.92
SS18-218ENST00000581021 A0A1W2PQJ5 194 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 TCRBV21S2A2A0A5A6 115 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 DDX3XO00571 662 aaKnown RBP eCLIP20.81■□□□□ 0.92
SS18-218ENST00000581021 DCLK1O15075 740 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 GYPCP04921 128 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 PABPC1P11940 636 aaKnown RBP20.81■□□□□ 0.92
SS18-218ENST00000581021 ABCB4P21439 1286 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 DEUP1Q05D60 604 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 C1QBPQ07021 282 aaKnown RBP20.81■□□□□ 0.92
SS18-218ENST00000581021 AUHQ13825 339 aaKnown RBP20.81■□□□□ 0.92
SS18-218ENST00000581021 C15orf59Q2T9L4 293 aaPredicted RBP20.81■□□□□ 0.92
SS18-218ENST00000581021 CCDC14Q49A88 953 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 CHST9Q7L1S5 443 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 MFN1Q8IWA4 741 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 ZNF683Q8IZ20 524 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 FIBINQ8TAL6 211 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 CYB5D2Q8WUJ1 264 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 GAB3Q8WWW8 586 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 RXFP2Q8WXD0 754 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 CIPCQ9C0C6 399 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 TKTL2Q9H0I9 626 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 STON1Q9Y6Q2 735 aa20.81■□□□□ 0.92
SS18-218ENST00000581021 F5H5T6 163 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 LUC7L3O95232 432 aaKnown RBP20.8■□□□□ 0.92
SS18-218ENST00000581021 CALB1P05937 261 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 CCDC172P0C7W6 258 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 PRKCHP24723 683 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 RFC1P35251 1148 aaPredicted RBP20.8■□□□□ 0.92
SS18-218ENST00000581021 ATP11AP98196 1134 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 SIM2Q14190 667 aaPredicted RBP20.8■□□□□ 0.92
SS18-218ENST00000581021 ZNF234Q14588 700 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 EIF4HQ15056 248 aaKnown RBP20.8■□□□□ 0.92
SS18-218ENST00000581021 PTPRNQ16849 979 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 PPP1R15BQ5SWA1 713 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 ACAD10Q6JQN1 1059 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 TRMT11Q7Z4G4 463 aaKnown RBP20.8■□□□□ 0.92
SS18-218ENST00000581021 FAM131BQ86XD5 332 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 MCOLN2Q8IZK6 566 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 CARNMT1Q8N4J0 409 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 DCLK2Q8N568 766 aa20.8■□□□□ 0.92
SS18-218ENST00000581021 C3orf20Q8ND61 904 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms