RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 HMGA1P17096 107 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 STIP1P31948 543 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 ELF1P32519 619 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 CTNNB1P35222 781 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 ALDH1A3P47895 512 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 PMS2P54278 862 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 CREMQ03060 361 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 TWF1Q12792 350 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 GPS2Q13227 327 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 PLD1Q13393 1074 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 TRIP4Q15650 581 aaPredicted RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 RNASEH2BQ5TBB1 312 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 BZW1Q7L1Q6 419 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 C14orf80Q86SX3 495 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 GPR65Q8IYL9 337 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 TCEAL8Q8IYN2 117 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 KRT222Q8N1A0 295 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 PHOSPHO2Q8TCD6 241 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 RTP4Q96DX8 246 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 PWWP2AQ96N64 755 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 LBHD1Q9BQE6 289 aaPredicted RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 HTATIP2Q9BUP3 242 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 RYDENQ9NUL5 291 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 DNAJC17Q9NVM6 304 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 TMEM51Q9NW97 253 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 MARCH2Q9P0N8 246 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 XPO7Q9UIA9 1087 aaKnown RBP10.85□□□□□ -0.67
SS18-217ENST00000580958 LHX6Q9UPM6 363 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 PLAAQ9Y263 795 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 TLR6Q9Y2C9 796 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 SSX2IPQ9Y2D8 614 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 MIA3Q5JRA6 1907 aa10.85□□□□□ -0.67
SS18-217ENST00000580958 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 HACD1B0YJ81 288 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 NDC80O14777 642 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 TLR5O60602 858 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 CXCL14O95715 111 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 APOEP02649 317 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 CNPP09543 421 aaKnown RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 SPATA31D3P0C874 917 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 SRGAP2BP0DMP2 458 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 SLC2A3P11169 496 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 EPHB2P29323 1055 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 OAS2P29728 719 aaKnown RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 PBX2P40425 430 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 SLMAPQ14BN4 828 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 VEPH1Q14D04 833 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 MORF4L2Q15014 288 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 PDK1Q15118 436 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 TAF12Q16514 161 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 PIK3R6Q5UE93 754 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 MANEALQ5VSG8 457 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 ANKRD22Q5VYY1 191 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 RWDD4Q6NW29 188 aaKnown RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 SPATA31D4Q6ZUB0 917 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 PDZD4Q76G19 769 aaPredicted RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 PCGF5Q86SE9 256 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 MIB1Q86YT6 1006 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 TP53INP2Q8IXH6 220 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 IQCKQ8N0W5 287 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 ATP6V0D2Q8N8Y2 350 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 PDZD8Q8NEN9 1154 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 TFB1MQ8WVM0 346 aaKnown RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 OVCA2Q8WZ82 227 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 CPT1BQ92523 772 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 PRCCQ92733 491 aaPredicted RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 TBC1D31Q96DN5 1066 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 ZNF512Q96ME7 567 aaPredicted RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 RUFY1Q96T51 708 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 MTIF3Q9H2K0 278 aaKnown RBP10.84□□□□□ -0.67
SS18-217ENST00000580958 EPB41L4BQ9H329 900 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 TRPM5Q9NZQ8 1165 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 PAK5Q9P286 719 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 STK39Q9UEW8 545 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 NEU3Q9UQ49 428 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 INSL5Q9Y5Q6 135 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 HS3ST4Q9Y661 456 aa10.84□□□□□ -0.67
SS18-217ENST00000580958 MKI67P46013 3256 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 ZNF840PA6NDX5 716 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 PPP1R12AO14974 1030 aaPredicted RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 CSPG5O95196 566 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 SYF2O95926 243 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 IGLV3-27P01718 113 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 HOXC13P31276 330 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 HTR7P34969 479 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 ACTN2P35609 894 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 BMPR1AP36894 532 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 EPHB3P54753 998 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 ERVFC1P60507 584 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 LSM11P83369 360 aaKnown RBP eCLIP10.83□□□□□ -0.68
SS18-217ENST00000580958 NRG1Q02297 640 aaPredicted RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 GAD2Q05329 585 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 AP1B1Q10567 949 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 PRKD1Q15139 912 aaPredicted RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 SPDYCQ5MJ68 293 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 ARTNQ5T4W7 220 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 UBAP2Q5T6F2 1119 aaKnown RBP10.83□□□□□ -0.68
SS18-217ENST00000580958 SNX30Q5VWJ9 437 aa10.83□□□□□ -0.68
SS18-217ENST00000580958 PLPP4Q5VZY2 271 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms