RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 DDX28Q9NUL7 540 aaKnown RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 GGA3Q9NZ52 723 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 UBA2Q9UBT2 640 aaPredicted RBP11.13□□□□□ -0.63
CLK3-226ENST00000569406 ZNF229Q9UJW7 825 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 CPQQ9Y646 472 aa11.13□□□□□ -0.63
CLK3-226ENST00000569406 SSU72P8A0A1W2PR75 194 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 MAGEC1O60732 1142 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SCO1O75880 301 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 EGFRP00533 1210 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CD48P09326 243 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CD247P20963 164 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ZNF76P36508 570 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SNTA1Q13424 505 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 APOFQ13790 326 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 TFDP1Q14186 410 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 Q3C1V9 767 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 UNC5DQ6UXZ4 953 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 IDO2Q6ZQW0 420 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 IGFN1Q86VF2 1251 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 UNC45BQ8IWX7 931 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 RDH13Q8NBN7 331 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 GRIN3AQ8TCU5 1115 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SLC5A5Q92911 643 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 MRRFQ96E11 262 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 CCDC120Q96HB5 630 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 TMEM109Q9BVC6 243 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 EDEM3Q9BZQ6 932 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CLPBQ9H078 707 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 FBXO28Q9NVF7 368 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 FBXO40Q9UH90 709 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 LOXHD1Q8IVV2 1947 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ZNFX1Q9P2E3 1918 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 A0A087X0T9 212 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 MAN1A2O60476 641 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ATE1O95260 518 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CDH1P12830 882 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ZNF23P17027 643 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SLC9A1P19634 815 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 MX2P20592 715 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ARHGDIAP52565 204 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 IRX4P78413 519 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SNAPC2Q13487 334 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 FGD3Q5JSP0 725 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 FAM182AQ5T1J6 154 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 DAW1Q8N136 415 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CADM2Q8N3J6 435 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ANKRD53Q8N9V6 530 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 LEMD2Q8NC56 503 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 WRNIP1Q96S55 665 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 NAP1L4Q99733 375 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 FOXP3Q9BZS1 431 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 VPS33BQ9H267 617 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 GPAMQ9HCL2 828 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 TCF7L2Q9NQB0 619 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 KLQ9UEF7 1012 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 FETUBQ9UGM5 382 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SCAF8Q9UPN6 1271 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 PHIPQ8WWQ0 1821 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 LCTP09848 1927 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 GSTTP1A0A1W2PQM5 241 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 C2orf81A6NN90 581 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ASNA1O43681 348 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 TM7SF2O76062 418 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 ALDH1A3P47895 512 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 NR2C2P49116 596 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CDH15P55291 814 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 JAM2P57087 298 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 GPR85P60893 370 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 KCNH2Q12809 1159 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SPP2Q13103 211 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 LAPTM5Q13571 262 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 DGKZQ13574 1117 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 OXA1LQ15070 435 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 KNOP1Q1ED39 458 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 LSM12Q3MHD2 195 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 RSBN1Q5VWQ0 802 aaPredicted RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 SHEQ5VZ18 495 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 GPR180Q86V85 440 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 RELL1Q8IUW5 271 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 GRK7Q8WTQ7 553 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 SEC14L1Q92503 715 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 TMA16Q96EY4 203 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 GPR88Q9GZN0 384 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 CDC42EP4Q9H3Q1 356 aaKnown RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 MAGEE1Q9HCI5 957 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 AVENQ9NQS1 362 aaPredicted RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 EPS15L1Q9UBC2 864 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 PTPN22Q9Y2R2 807 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 PCDHGA10Q9Y5H3 936 aa11.12□□□□□ -0.63
CLK3-226ENST00000569406 COL11A1P12107 1806 aaPredicted RBP11.12□□□□□ -0.63
CLK3-226ENST00000569406 CENPFP49454 3210 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 TSPAN4O14817 238 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 SCO2O43819 266 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 RAD17O75943 681 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 OR5F1O95221 314 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ASNSP08243 561 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 ITGAXP20702 1163 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 CA4P22748 312 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 MAPK7Q13164 816 aa11.11□□□□□ -0.63
CLK3-226ENST00000569406 EFHC1Q5JVL4 640 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms