RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 EGFLAMQ63HQ2 1017 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 TMEM215Q68D42 235 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 PLEKHA7Q6IQ23 1121 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 DNAJC24Q6P3W2 148 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 SYT13Q7L8C5 426 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ANKS1BQ7Z6G8 1248 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 KIAA0907Q7Z7F0 614 aaPredicted RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 C14orf80Q86SX3 495 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CHSY1Q86X52 802 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ZNF683Q8IZ20 524 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ALLCQ8N6M5 410 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ZBTB44Q8NCP5 570 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CENPIQ92674 756 aaPredicted RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 TMA16Q96EY4 203 aaKnown RBP10.15□□□□□ -0.78
CLK3-220ENST00000567992 VCPIP1Q96JH7 1222 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ACOX2Q99424 681 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 SLC2A11Q9BYW1 496 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 TKTL2Q9H0I9 626 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CD248Q9HCU0 757 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 TMPRSS4Q9NRS4 437 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 CKAP5Q14008 2032 aa10.15□□□□□ -0.78
CLK3-220ENST00000567992 ZFHX2Q9C0A1 2572 aaPredicted RBP10.15□□□□□ -0.79
CLK3-220ENST00000567992 A0A087X0T9 212 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 SGK1O00141 431 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 CCP110O43303 1012 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 LILRB5O75023 590 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 MFAP3LO75121 409 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ATG13O75143 517 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 LUC7L3O95232 432 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 KLF8O95600 359 aaPredicted RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 F9P00740 461 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 FTLP02792 175 aaPredicted RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 FAM228BP0C875 321 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 PDGFRAP16234 1089 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ABCB4P21439 1286 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 GPD1P21695 349 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 HOXA6P31267 233 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 SDC4P31431 198 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 CD70P32970 193 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 RDXP35241 583 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 TIE1P35590 1138 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 HDAC4P56524 1084 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ATP11AP98196 1134 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 DEUP1Q05D60 604 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ZNF252P-AS1Q0IIN9 211 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 MAMLD1Q13495 774 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 AUHQ13825 339 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 TRIM14Q14142 442 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 DMC1Q14565 340 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ASTE1Q2TB18 679 aaPredicted RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 PREPLQ4J6C6 727 aaPredicted RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 TDRD12Q587J7 1177 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 FSCBQ5H9T9 825 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 BRMS1LQ5PSV4 323 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 PPP1R2P3Q6NXS1 205 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 FBXL22Q6P050 247 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 TMEM92Q6UXU6 159 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ADIPOR2Q86V24 386 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 LGI2Q8N0V4 545 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 CFAP52Q8N1V2 620 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 CCDC33Q8N5R6 958 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ZNF513Q8N8E2 541 aaPredicted RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 ATP6V0D2Q8N8Y2 350 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 TXNDC5Q8NBS9 432 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 CCDC26Q8TAB7 109 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 KCNV2Q8TDN2 545 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ATOH1Q92858 354 aaPredicted RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 IGSF8Q969P0 613 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ACDQ96AP0 544 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 MCEEQ96PE7 176 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 DDX50Q9BQ39 737 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 SELENOOQ9BVL4 669 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ISCUQ9H1K1 167 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 ADAMTS1Q9UHI8 967 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 MMP17Q9ULZ9 603 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 SNX10Q9Y5X0 201 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 BZW2Q9Y6E2 419 aaKnown RBP10.14□□□□□ -0.79
CLK3-220ENST00000567992 PIEZO1Q92508 2521 aa10.14□□□□□ -0.79
CLK3-220ENST00000567992 PLXND1Q9Y4D7 1925 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 PROB1E7EW31 1015 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 F5H5T6 163 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 RTN2O75298 545 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 PLA2G5P39877 138 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 ZNF143P52747 638 aaPredicted RBP10.13□□□□□ -0.79
CLK3-220ENST00000567992 LMAN2Q12907 356 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 ENPP2Q13822 863 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 CDO1Q16878 200 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 FUT11Q495W5 492 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 HSF5Q4G112 596 aaPredicted RBP10.13□□□□□ -0.79
CLK3-220ENST00000567992 STRADAQ7RTN6 431 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 TMC6Q7Z403 805 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 CIR1Q86X95 450 aaPredicted RBP10.13□□□□□ -0.79
CLK3-220ENST00000567992 FAM131BQ86XD5 332 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 MFN1Q8IWA4 741 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 DRC7Q8IY82 874 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 CCDC185Q8N715 623 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 FIBINQ8TAL6 211 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 FAM172AQ8WUF8 416 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 SORCS1Q8WY21 1168 aa10.13□□□□□ -0.79
CLK3-220ENST00000567992 RNF34Q969K3 372 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms