RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 C1orf131Q8NDD1 294 aaKnown RBP21.5■■□□□ 1.03
CLN3-219ENST00000565778 FIBINQ8TAL6 211 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 WFDC5Q8TCV5 224 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 RNF34Q969K3 372 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 CD93Q9NPY3 652 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 PLCB1Q9NQ66 1216 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.5■■□□□ 1.03
CLN3-219ENST00000565778 TAB2Q9NYJ8 693 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 PILRBQ9UKJ0 227 aa21.5■■□□□ 1.03
CLN3-219ENST00000565778 SYNJ2BP-COX16A0A087WUM0 186 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 GRAP2O75791 330 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 DLDP09622 509 aaKnown RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 HLA-EP13747 358 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 CD6P30203 668 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 PITX1P78337 314 aaPredicted RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 DAB2IPQ5VWQ8 1189 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 RAP1GAP2Q684P5 730 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 SASS6Q6UVJ0 657 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 LGI2Q8N0V4 545 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 MYEOVQ96EZ4 313 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 BTN2A3PQ96KV6 586 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 PRICKLE1Q96MT3 831 aaPredicted RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 LSM14BQ9BX40 385 aaKnown RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 VPS16Q9H269 839 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 FAM204AQ9H8W3 233 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 TMEM9BQ9NQ34 198 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 ASNSD1Q9NWL6 643 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 COX16Q9P0S2 106 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 EVLQ9UI08 416 aaPredicted RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 XPO7Q9UIA9 1087 aaKnown RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 FHOD1Q9Y613 1164 aa21.49■■□□□ 1.03
CLN3-219ENST00000565778 ATXN2Q99700 1313 aaKnown RBP21.49■■□□□ 1.03
CLN3-219ENST00000565778 H0Y626 953 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 HSF2BPO75031 334 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 CFIP05156 583 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 TPM2P07951 284 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 LMAN2Q12907 356 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 DUOXA1Q1HG43 343 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 FAM183BPQ6ZVS7 135 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 CHSY1Q86X52 802 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 SLC41A1Q8IVJ1 513 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 RGL4Q8IZJ4 473 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 ZNF366Q8N895 744 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 TMEM35BQ8NCS4 154 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 CEP76Q8TAP6 659 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 ZNF419Q96HQ0 510 aaPredicted RBP21.48■■□□□ 1.03
CLN3-219ENST00000565778 HSPA12BQ96MM6 686 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 SLC2A13Q96QE2 648 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 TMEM245Q9H330 911 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 DDIT4Q9NX09 232 aa21.48■■□□□ 1.03
CLN3-219ENST00000565778 KCNU1A8MYU2 1149 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 IGLV3-25P01717 112 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 ERBB2P04626 1255 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 SLC2A3P11169 496 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 UCHL3P15374 230 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 CYP11B1P15538 503 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 ABCB4P21439 1286 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 TACR2P21452 398 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 TPMTP51580 245 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 COPAP53621 1224 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 SLC6A3Q01959 620 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 CDH18Q13634 790 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 SYCP2LQ5T4T6 812 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 SLC23A3Q6PIS1 610 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 OR2T3Q8NH03 318 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 FOXJ1Q92949 421 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 TOE1Q96GM8 510 aaKnown RBP21.47■■□□□ 1.03
CLN3-219ENST00000565778 WSB2Q9NYS7 404 aaPredicted RBP21.47■■□□□ 1.03
CLN3-219ENST00000565778 USP36Q9P275 1121 aaKnown RBP21.47■■□□□ 1.03
CLN3-219ENST00000565778 SUN2Q9UH99 717 aa21.47■■□□□ 1.03
CLN3-219ENST00000565778 CACNA1AO00555 2505 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 CDX4O14627 284 aaPredicted RBP21.46■■□□□ 1.03
CLN3-219ENST00000565778 OXTRP30559 389 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 CCR1P32246 355 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 HOXD12P35452 270 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 RNASE9P60153 205 aaKnown RBP21.46■■□□□ 1.03
CLN3-219ENST00000565778 ST8SIA6P61647 398 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 NME3Q13232 169 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 EIF4EBP2Q13542 120 aaPredicted RBP21.46■■□□□ 1.03
CLN3-219ENST00000565778 CAMK2GQ13555 558 aaPredicted RBP21.46■■□□□ 1.03
CLN3-219ENST00000565778 PTPRNQ16849 979 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 UAP1L1Q3KQV9 507 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 PTPN20Q4JDL3 420 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 FSCBQ5H9T9 825 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 TAF3Q5VWG9 929 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 OLFML1Q6UWY5 402 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 CACUL1Q86Y37 369 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 NUP58Q9BVL2 599 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 GPR174Q9BXC1 333 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 STK33Q9BYT3 514 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 FANCLQ9NW38 375 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 KIAA1522Q9P206 1035 aaPredicted RBP21.46■■□□□ 1.03
CLN3-219ENST00000565778 SLC6A14Q9UN76 642 aa21.46■■□□□ 1.03
CLN3-219ENST00000565778 NUP205Q92621 2012 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 F5H5T6 163 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 LUC7L3O95232 432 aaKnown RBP21.45■■□□□ 1.02
CLN3-219ENST00000565778 MOCS3O95396 460 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 ENGP17813 658 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 NOS2P35228 1153 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 MAPK8P45983 427 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms