RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 CNTNAP3BQ96NU0 1288 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 NOX5Q96PH1 765 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 TUBGCP2Q9BSJ2 902 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 GPR174Q9BXC1 333 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 CNTNAP3Q9BZ76 1288 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 TMEM245Q9H330 911 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 NDST4Q9H3R1 872 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 PCDHGC3Q9UN70 934 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 CKAP5Q14008 2032 aa23.31■■□□□ 1.32
CLN3-215ENST00000565236 ACACBO00763 2458 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 TRUB2O95900 331 aaKnown RBP23.3■■□□□ 1.32
CLN3-215ENST00000565236 KRT9P35527 623 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 ANP32AP39687 249 aaKnown RBP23.3■■□□□ 1.32
CLN3-215ENST00000565236 RPS24P62847 133 aaKnown RBP23.3■■□□□ 1.32
CLN3-215ENST00000565236 TAF5Q15542 800 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 PTPRNQ16849 979 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 VWA3BQ502W6 1294 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 HSP90AA4PQ58FG1 418 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 DCAF6Q58WW2 860 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 ZC3H12AQ5D1E8 599 aaKnown RBP23.3■■□□□ 1.32
CLN3-215ENST00000565236 MS4A13Q5J8X5 152 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 SH3PXD2AQ5TCZ1 1133 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 CACUL1Q86Y37 369 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 PASD1Q8IV76 773 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 CARNMT1Q8N4J0 409 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 ZNF366Q8N895 744 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 NUP58Q9BVL2 599 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 GTPBP2Q9BX10 602 aaKnown RBP23.3■■□□□ 1.32
CLN3-215ENST00000565236 NUCKS1Q9H1E3 243 aaKnown RBP23.3■■□□□ 1.32
CLN3-215ENST00000565236 LHX5Q9H2C1 402 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 CAPN10Q9HC96 672 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 SIX2Q9NPC8 291 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 SUSD2Q9UGT4 822 aa23.3■■□□□ 1.32
CLN3-215ENST00000565236 ASCC3Q8N3C0 2202 aaKnown RBP23.29■■□□□ 1.32
CLN3-215ENST00000565236 MEI4A8MW99 385 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 FOXN3O00409 490 aaPredicted RBP23.29■■□□□ 1.32
CLN3-215ENST00000565236 GNSP15586 552 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 CSRP1P21291 193 aaKnown RBP23.29■■□□□ 1.32
CLN3-215ENST00000565236 CDK17Q00537 523 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 EFHC1Q5JVL4 640 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 CFAP52Q8N1V2 620 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 CADM4Q8NFZ8 388 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 MYEOVQ96EZ4 313 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 BTN2A3PQ96KV6 586 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 PRICKLE1Q96MT3 831 aaPredicted RBP23.29■■□□□ 1.32
CLN3-215ENST00000565236 CPXM1Q96SM3 734 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 FSCN3Q9NQT6 498 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.29■■□□□ 1.32
CLN3-215ENST00000565236 TJP2Q9UDY2 1190 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 SUN2Q9UH99 717 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 SLC12A6Q9UHW9 1150 aa23.29■■□□□ 1.32
CLN3-215ENST00000565236 PES1O00541 588 aaKnown RBP23.28■■□□□ 1.32
CLN3-215ENST00000565236 GIPC1O14908 333 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 GLI1P08151 1106 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 SYPP08247 313 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 CEACAM1P13688 526 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 MAOBP27338 520 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 SNX16P57768 344 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 ST8SIA6P61647 398 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 CDH18Q13634 790 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 PLEKHG6Q3KR16 790 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 LGI2Q8N0V4 545 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 ATP6V0D2Q8N8Y2 350 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 LMLNQ96KR4 655 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 FAM204AQ9H8W3 233 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 FBRSQ9HAH7 460 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 XPO7Q9UIA9 1087 aaKnown RBP23.28■■□□□ 1.32
CLN3-215ENST00000565236 AJAP1Q9UKB5 411 aaPredicted RBP23.28■■□□□ 1.32
CLN3-215ENST00000565236 ANGPTL2Q9UKU9 493 aa23.28■■□□□ 1.32
CLN3-215ENST00000565236 ADAMTS9Q9P2N4 1935 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 ARHGAP33O14559 1287 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 IGLV3-19P01714 112 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 IGLV3-25P01717 112 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 SLC2A3P11169 496 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 CLCN1P35523 988 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 BPIFB4P59827 614 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 MIIPQ5JXC2 388 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 RAP1GAP2Q684P5 730 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 OR6B2Q6IFH4 312 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 FAM124AQ86V42 546 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 SLC47A2Q86VL8 602 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 CHSY1Q86X52 802 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 DEFB106AQ8N104 65 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 HDDC3Q8N4P3 179 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 RNF34Q969K3 372 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 TTC17Q96AE7 1141 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 SYNCQ9H7C4 482 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 PRSS16Q9NQE7 514 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 ASNSD1Q9NWL6 643 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 NFE2L3Q9Y4A8 694 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 CEP83Q9Y592 693 aa23.27■■□□□ 1.32
CLN3-215ENST00000565236 KCNU1A8MYU2 1149 aa23.26■■□□□ 1.31
CLN3-215ENST00000565236 H0Y626 953 aa23.26■■□□□ 1.31
CLN3-215ENST00000565236 ASLP04424 464 aa23.26■■□□□ 1.31
CLN3-215ENST00000565236 TACR2P21452 398 aa23.26■■□□□ 1.31
CLN3-215ENST00000565236 PMLP29590 882 aa23.26■■□□□ 1.31
CLN3-215ENST00000565236 CSKP41240 450 aa23.26■■□□□ 1.31
CLN3-215ENST00000565236 PITX1P78337 314 aaPredicted RBP23.26■■□□□ 1.31
CLN3-215ENST00000565236 CT47A1Q5JQC4 288 aaPredicted RBP23.26■■□□□ 1.31
CLN3-215ENST00000565236 C11orf57Q6ZUT1 292 aaPredicted RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms