RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MSANTD2Q6P1R3 559 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 SLC35F5Q8WV83 523 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 UCMAQ8WVF2 138 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 TM7SF3Q9NS93 570 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 ABCC13Q9NSE7 274 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 EIF2B4Q9UI10 523 aaKnown RBP19.77■□□□□ 0.76
VPS35-202ENST00000561713 RAXQ9Y2V3 346 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 KNL1Q8NG31 2342 aa19.77■□□□□ 0.76
VPS35-202ENST00000561713 PTPRBP23467 1997 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 BICDL2A1A5D9 508 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 NPC1O15118 1278 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 CER1O95813 267 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 LTFP02788 710 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 EPHX1P07099 455 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 KRT5P13647 590 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 OXTRP30559 389 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 SLC6A4P31645 630 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 PPP1R2P41236 205 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 MATKP42679 507 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 DENND1BQ6P3S1 775 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 GJB7Q6PEY0 223 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 SERPINA13PQ6UXR4 307 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 MARCH9Q86YJ5 346 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 C1orf216Q8TAB5 229 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 BAHD1Q8TBE0 780 aaPredicted RBP19.76■□□□□ 0.75
VPS35-202ENST00000561713 ADAM32Q8TC27 787 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 HNRNPLLQ8WVV9 542 aaKnown RBP19.76■□□□□ 0.75
VPS35-202ENST00000561713 PRCCQ92733 491 aaPredicted RBP19.76■□□□□ 0.75
VPS35-202ENST00000561713 MYEOVQ96EZ4 313 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 SRRTQ9BXP5 876 aaKnown RBP19.76■□□□□ 0.75
VPS35-202ENST00000561713 ACP6Q9NPH0 428 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 ABCB8Q9NUT2 735 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 TOR4AQ9NXH8 423 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 KIAA1522Q9P206 1035 aaPredicted RBP19.76■□□□□ 0.75
VPS35-202ENST00000561713 SLCO1B1Q9Y6L6 691 aa19.76■□□□□ 0.75
VPS35-202ENST00000561713 PMM2O15305 246 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 IGLV3-19P01714 112 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 AFPP02771 609 aaKnown RBP19.75■□□□□ 0.75
VPS35-202ENST00000561713 ATXN1LP0C7T5 689 aaKnown RBP19.75■□□□□ 0.75
VPS35-202ENST00000561713 ZNF883P0CG24 379 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 ACADMP11310 421 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 APBA1Q02410 837 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 ARID5AQ03989 594 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 CETN1Q12798 172 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 EIF4HQ15056 248 aaKnown RBP19.75■□□□□ 0.75
VPS35-202ENST00000561713 CNGA2Q16280 664 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 FNDC3BQ53EP0 1204 aaKnown RBP19.75■□□□□ 0.75
VPS35-202ENST00000561713 MPPE1Q53F39 396 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 NADSYN1Q6IA69 706 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 IL27RAQ6UWB1 636 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 CHST9Q7L1S5 443 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 FAM124AQ86V42 546 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 ELOA2Q8IYF1 753 aaPredicted RBP19.75■□□□□ 0.75
VPS35-202ENST00000561713 PRICKLE1Q96MT3 831 aaPredicted RBP19.75■□□□□ 0.75
VPS35-202ENST00000561713 CRACR2AQ9BSW2 395 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 NUP58Q9BVL2 599 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 ST7Q9NRC1 585 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 KIAA1257Q9ULG3 409 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.75■□□□□ 0.75
VPS35-202ENST00000561713 PLXNA2O75051 1894 aa19.75■□□□□ 0.75
VPS35-202ENST00000561713 APC2O95996 2303 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 A0A1B0GVT2 93 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 P4HA2O15460 535 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 TBL1XO60907 577 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 IGLV3-27P01718 113 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 CD70P32970 193 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 CSNK1EP49674 416 aaKnown RBP19.74■□□□□ 0.75
VPS35-202ENST00000561713 GCNT1Q02742 428 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 CAMK4Q16566 473 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 FAM133BQ5BKY9 247 aaKnown RBP19.74■□□□□ 0.75
VPS35-202ENST00000561713 ADGRF1Q5T601 910 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 DBX2Q6ZNG2 339 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 TMPRSS7Q7RTY8 843 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 SCML4Q8N228 414 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 EHBP1Q8NDI1 1231 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 DQX1Q8TE96 717 aaKnown RBP19.74■□□□□ 0.75
VPS35-202ENST00000561713 RHBDD1Q8TEB9 315 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 SLC2A11Q9BYW1 496 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 STIM2Q9P246 746 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 GGA2Q9UJY4 613 aa19.74■□□□□ 0.75
VPS35-202ENST00000561713 GOLGA8CPA6NN73 597 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 MOCS2O96007 188 aaPredicted RBP19.73■□□□□ 0.75
VPS35-202ENST00000561713 PABPC1P11940 636 aaKnown RBP19.73■□□□□ 0.75
VPS35-202ENST00000561713 TBX4P57082 545 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 TAC4Q86UU9 113 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 ADIPOR2Q86V24 386 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 IRGQQ8WZA9 623 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 SNX19Q92543 992 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 FAM149B1Q96BN6 582 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 TMA16Q96EY4 203 aaKnown RBP19.73■□□□□ 0.75
VPS35-202ENST00000561713 TJP2Q9UDY2 1190 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 CYTH4Q9UIA0 394 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 STOML2Q9UJZ1 356 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 NAALADL1Q9UQQ1 740 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 BTBD3Q9Y2F9 522 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 ACACAQ13085 2346 aa19.73■□□□□ 0.75
VPS35-202ENST00000561713 DKK1O94907 266 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 LATS1O95835 1130 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 FYNP06241 537 aa19.72■□□□□ 0.75
VPS35-202ENST00000561713 NUMBP49757 651 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms