RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 TSPAN14Q8NG11 270 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SLC44A1Q8WWI5 657 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 APBB2Q92870 758 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 FAM136AQ96C01 138 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 MMP19Q99542 508 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TSPAN16Q9UKR8 245 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 MYH7P12883 1935 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 UGT1A9O60656 530 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 MAGEC1O60732 1142 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 MFN2O95140 757 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 VDRP11473 427 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ZNF23P17027 643 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ME2P23368 584 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CLK1P49759 484 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 SCNN1BP51168 640 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 POU5F1Q01860 360 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 CDC16Q13042 620 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TBCELQ5QJ74 424 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 MPZL3Q6UWV2 235 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 AMIGO2Q86SJ2 522 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 PCYOX1LQ8NBM8 494 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ZNF555Q8NEP9 628 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 EBF4Q9BQW3 602 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SPATA16Q9BXB7 569 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ZNF395Q9H8N7 513 aaPredicted RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 UGT1A7Q9HAW7 530 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 UGT1A10Q9HAW8 530 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 UGT1A8Q9HAW9 530 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 GPAMQ9HCL2 828 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 DMAC2Q9NW81 257 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 GALNT8Q9NY28 637 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 HACD3Q9P035 362 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CDV3Q9UKY7 258 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 HEATR9A2RTY3 570 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SIGLEC16A6NMB1 481 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 GOLGA8CPA6NN73 597 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ASNA1O43681 348 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 BPGMP07738 259 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 EIF4BP23588 611 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 KLRC2P26717 231 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ETFBP38117 255 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CDKN2BP42772 138 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CLCN3P51790 818 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TGFB2P61812 414 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CACNB2Q08289 660 aaPredicted RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 STX5Q13190 355 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 KCNT2Q6UVM3 1135 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 UNC5AQ6ZN44 842 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 FRA10AC1Q70Z53 315 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 KRT73Q86Y46 540 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TDRPQ86YL5 185 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 IFT43Q96FT9 208 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 QTRT2Q9H974 415 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 VANGL2Q9ULK5 521 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 PPM1HQ9ULR3 514 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CLEC11AQ9Y240 323 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 LRRC42Q9Y546 428 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 M0QYT0 321 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ERBB2P04626 1255 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 STAG3L1P0CL83 205 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 VCLP18206 1134 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TUBP50607 506 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 NDST1P52848 882 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 GRIK3Q13003 919 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 NDUFA5Q16718 116 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CCDC142Q17RM4 750 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 GRTP1Q5TC63 336 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 LRRC38Q5VT99 294 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 AAGABQ6PD74 315 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CCDC60Q8IWA6 550 aaPredicted RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 MICU2Q8IYU8 434 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 HTR3CQ8WXA8 447 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 RCN3Q96D15 328 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 NOL6Q9H6R4 1146 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 PTPRHQ9HD43 1115 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP3-210ENST00000559192 BLOC1S6Q9UL45 172 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 KLHL20Q9Y2M5 609 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SMIM31A0A1B0GVY4 71 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TBKBP1A7MCY6 615 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 AP3B1O00203 1094 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 TCEA3O75764 348 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 OCM2P0CE71 109 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 OCMP0CE72 109 aaPredicted RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 GNAZP19086 355 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 EPHA3P29320 983 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 MPP3Q13368 585 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 KRR1Q13601 381 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 CSHL1Q14406 222 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 CAPRIN1Q14444 709 aaKnown RBP7.28□□□□□ -1.24
USP3-210ENST00000559192 CCDC81Q6ZN84 652 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 FAM183BPQ6ZVS7 135 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SPATA6LQ8N4H0 392 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 ATPAF2Q8N5M1 289 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 APPL2Q8NEU8 664 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 C17orf50Q8WW18 174 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 PANX3Q96QZ0 392 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 SLC4A5Q9BY07 1137 aa7.28□□□□□ -1.24
USP3-210ENST00000559192 EPB41L4BQ9H329 900 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms