RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 CDIP1Q9H305 208 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 PIF1Q9H611 641 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 CNTD2Q9H8S5 307 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 EBF2Q9HAK2 575 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 UBN1Q9NPG3 1134 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 ZDHHC18Q9NUE0 388 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS33B-203ENST00000554264 EHD2Q9NZN4 543 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 MARCH2Q9P0N8 246 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 SENP1Q9P0U3 644 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 BCCIPQ9P287 314 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS33B-203ENST00000554264 UVRAGQ9P2Y5 699 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 AMACRQ9UHK6 382 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 MBD1Q9UIS9 605 aaPredicted RBP6.22□□□□□ -1.41
VPS33B-203ENST00000554264 USP15Q9Y4E8 981 aaPredicted RBP6.22□□□□□ -1.41
VPS33B-203ENST00000554264 TIMM13Q9Y5L4 95 aaPredicted RBP6.22□□□□□ -1.41
VPS33B-203ENST00000554264 XIRP2A4UGR9 3374 aa6.22□□□□□ -1.41
VPS33B-203ENST00000554264 MUC6Q6W4X9 2439 aa6.21□□□□□ -1.41
VPS33B-203ENST00000554264 MCM3APO60318 1980 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ABHD14A-ACY1A0A1B0GW23 586 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ZSCAN5CA6NGD5 496 aaPredicted RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 RASGRF2O14827 1237 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ADAMTS3O15072 1205 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 KIAA0391O15091 583 aaKnown RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TTI1O43156 1089 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 GJB5O95377 273 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 GAS8O95995 478 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 LMNAP02545 664 aaKnown RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 NTRK1P04629 796 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 CYBBP04839 570 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 CYP3A4P08684 503 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 GOLGA8HP0CJ92 632 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 KRT13P13646 458 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 IL9P15248 144 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TNFAIP3P21580 790 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 SCP2P22307 547 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 FPR2P25090 351 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 CTNNA2P26232 953 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 LTBRP36941 435 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ALDH5A1P51649 535 aaPredicted RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 GALCP54803 685 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ELF3P78545 371 aaPredicted RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 RNASELQ05823 741 aaKnown RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 GIT2Q14161 759 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 PPP1R7Q15435 360 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ZRSR2Q15696 482 aaKnown RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 PTPROQ16827 1216 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 SKIDA1Q1XH10 827 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TTC19Q6DKK2 380 aaPredicted RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 DPY19L2P1Q6NXN4 242 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 PAQR3Q6TCH7 311 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 USP53Q70EK8 1073 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 INTS8Q75QN2 995 aaKnown RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 CEP57Q86XR8 500 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 C12orf56Q8IXR9 622 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 FAM186BQ8IYM0 893 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 DYDC1Q8WWB3 177 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TCP11Q8WWU5 503 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 N4BP2L2Q92802 583 aaPredicted RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 HPS3Q969F9 1004 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 MIEF2Q96C03 454 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ANO3Q9BYT9 981 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TRIM6Q9C030 488 aaPredicted RBP6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TMEM206Q9H813 350 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 JMJD4Q9H9V9 463 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 NOD2Q9HC29 1040 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 TXLNGQ9NUQ3 528 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 SMARCAL1Q9NZC9 954 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 PNMA2Q9UL42 364 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 CCPG1Q9ULG6 757 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 SUFUQ9UMX1 484 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ATP8A1Q9Y2Q0 1164 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 ARL2BPQ9Y2Y0 163 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 SIT1Q9Y3P8 196 aa6.21□□□□□ -1.42
VPS33B-203ENST00000554264 MYH11P35749 1972 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 TEX51A0A1B0GUA7 166 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 LCHNA4D1U4 455 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 LINC01553A4QN01 128 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 HRKO00198 91 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 DDX3XO00571 662 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS33B-203ENST00000554264 SNX3O60493 162 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 RTN2O75298 545 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 OAS1P00973 400 aaKnown RBP6.2□□□□□ -1.42
VPS33B-203ENST00000554264 CXCL10P02778 98 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 ICAM1P05362 532 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 MYBL1P10243 752 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 CHN1P15882 459 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 ALDH3A1P30838 453 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 SREBF1P36956 1147 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 SLC1A1P43005 524 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 FMO5P49326 533 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 CLNS1AP54105 237 aaKnown RBP6.2□□□□□ -1.42
VPS33B-203ENST00000554264 SH3BGRP55822 239 aaPredicted RBP6.2□□□□□ -1.42
VPS33B-203ENST00000554264 GPC5P78333 572 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 DEFB103AP81534 67 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 PRR5P85299 388 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 MYL7Q01449 175 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 STRN3Q13033 797 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 KCNAB2Q13303 367 aa6.2□□□□□ -1.42
VPS33B-203ENST00000554264 BAATQ14032 418 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms