RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CCR1P32246 355 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 SEC24CP53992 1094 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 ATN1P54259 1190 aaPredicted RBP27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 FAAP100Q0VG06 881 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 SYCP2LQ5T4T6 812 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 MSANTD2Q6P1R3 559 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 TRABD2AQ86V40 505 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 LRRC43Q8N309 656 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 COLGALT1Q8NBJ5 622 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 NMUR1Q9HB89 426 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 SNX10Q9Y5X0 201 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 TNRC18O15417 2968 aaPredicted RBP27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 TMEM120BA0PK00 339 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 MTSS1O43312 755 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 EPHB2P29323 1055 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 CCL23P55773 120 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 PPIDQ08752 370 aaKnown RBP27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 GALNT2Q10471 571 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 WASHC5Q12768 1159 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 DDR2Q16832 855 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 PARP6Q2NL67 630 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 FOXR1Q6PIV2 292 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 SPPL2BQ8TCT7 592 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 CASP10Q92851 521 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 CYTH2Q99418 400 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 RABEP2Q9H5N1 569 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 IGSF9Q9P2J2 1179 aa27.11■■□□□ 1.93
CCDC88C-205ENST00000553403 KIAA0100Q14667 2235 aaKnown RBP27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 PLXNA3P51805 1871 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 RASA4BC9J798 803 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 RASA4O43374 803 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 MLNP12872 115 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 GPR15P49685 360 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 PPARDQ03181 441 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 GPR17Q13304 367 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 FAM182AQ5T1J6 154 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 ADGRD1Q6QNK2 874 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 DENND5BQ6ZUT9 1274 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 ZNF534Q76KX8 674 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 SRRM1Q8IYB3 904 aaKnown RBP27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 AGGF1Q8N302 714 aaeCLIP27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 ZNF473Q8WTR7 871 aaKnown RBP27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 HDAC11Q96DB2 347 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 SERPINB11Q96P15 392 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 COMMD8Q9NX08 183 aa27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 ZNF638Q14966 1978 aaKnown RBP27.1■■□□□ 1.93
CCDC88C-205ENST00000553403 FAM92AA1XBS5 289 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 AVILO75366 819 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 CREB1P16220 341 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 HOXC13P31276 330 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 STX2P32856 288 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 PGFP49763 221 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 C1orf53Q5VUE5 145 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 ANKS3Q6ZW76 656 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 ATAD1Q8NBU5 361 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 C2orf15Q8WU43 125 aaKnown RBP27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 PGLYRP2Q96PD5 576 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 CRISPLD2Q9H0B8 497 aa27.09■■□□□ 1.93
CCDC88C-205ENST00000553403 SCN5AQ14524 2016 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 RTN3O95197 1032 aaPredicted RBP27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 CCT5P48643 541 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 MNX1P50219 401 aaPredicted RBP27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 MTM1Q13496 603 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 SDHAF4Q5VUM1 108 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 TP53INP2Q8IXH6 220 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 ZNF567Q8N184 647 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 NPWQ8N729 165 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 PPP1R12CQ9BZL4 782 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 KCNK9Q9NPC2 374 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 HCSTQ9UBK5 93 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 SFMBT1Q9UHJ3 866 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 NR2E3Q9Y5X4 410 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 TET1Q8NFU7 2136 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 MYO16Q9Y6X6 1858 aa27.08■■□□□ 1.93
CCDC88C-205ENST00000553403 MTMR11A4FU01 709 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 TRDMT1O14717 391 aaKnown RBP27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 CPB1P15086 417 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 MSH2P43246 934 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 NRG1Q02297 640 aaPredicted RBP27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 TLE2Q04725 743 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 ZNF33AQ06730 810 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 NETO2Q8NC67 525 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 SPATA17Q96L03 361 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 PAFAH2Q99487 392 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 TTPALQ9BTX7 342 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 OSER1Q9NX31 292 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 SEPT10Q9P0V9 454 aa27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 ZC3H7BQ9UGR2 993 aaKnown RBP27.08■■□□□ 1.92
CCDC88C-205ENST00000553403 TCRBV9S1A1TA0A576 114 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 PAGE1O75459 146 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 COG7P83436 770 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 TRIM60Q495X7 471 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 MANEALQ5VSG8 457 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 CHMP6Q96FZ7 201 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 B3GALT6Q96L58 329 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 SIGLEC10Q96LC7 697 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 NEU3Q9UQ49 428 aa27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 FNDC1Q4ZHG4 1894 aaPredicted RBP27.07■■□□□ 1.92
CCDC88C-205ENST00000553403 DNAH12Q6ZR08 3092 aa27.06■■□□□ 1.92
CCDC88C-205ENST00000553403 KCNU1A8MYU2 1149 aa27.06■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms