RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PPM1JQ5JR12 505 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 OGFRL1Q5TC84 451 aaPredicted RBP18.02■□□□□ 0.48
SYNE3-202ENST00000553340 PMF1Q6P1K2 205 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 RTKNQ9BST9 563 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 INPP5FQ9Y2H2 1132 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 PSAT1Q9Y617 370 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 C15orf38-AP3S2A0A0A6YYH1 394 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 ZBTB42B2RXF5 422 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 ZMPSTE24O75844 475 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 ALDH1A3P47895 512 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 SESN2P58004 480 aaPredicted RBP18.02■□□□□ 0.48
SYNE3-202ENST00000553340 LRRC8BQ6P9F7 803 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 FBXL19Q6PCT2 694 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 ARPINQ7Z6K5 226 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 SCUBE3Q8IX30 993 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 TTC39CQ8N584 583 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 C12orf29Q8N999 325 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 HTR3CQ8WXA8 447 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 WRNIP1Q96S55 665 aa18.02■□□□□ 0.48
SYNE3-202ENST00000553340 C6orf203Q9P0P8 240 aaPredicted RBP18.02■□□□□ 0.48
SYNE3-202ENST00000553340 A0A0A0MRY4 1105 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 CREB3O43889 395 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 GARSP41250 739 aaKnown RBP18.02■□□□□ 0.47
SYNE3-202ENST00000553340 MBTD1Q05BQ5 628 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 KLF10Q13118 480 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 CCDC153Q494R4 210 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 TRIM50Q86XT4 487 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 KHSRPQ92945 711 aaKnown RBP eCLIP18.02■□□□□ 0.47
SYNE3-202ENST00000553340 SPATA13Q96N96 652 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 GCNAQ96QF7 691 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 NAT9Q9BTE0 207 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 COG4Q9H9E3 785 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 PSMD13Q9UNM6 376 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 PCDHB12Q9Y5F1 795 aa18.02■□□□□ 0.47
SYNE3-202ENST00000553340 F5H423 210 aaPredicted RBP18.01■□□□□ 0.47
SYNE3-202ENST00000553340 PDLIM1O00151 329 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 TGFB3P10600 412 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 MGAT1P26572 445 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 R3HDM1Q15032 1099 aaKnown RBP18.01■□□□□ 0.47
SYNE3-202ENST00000553340 METTL21CQ5VZV1 264 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 EPGNQ6UW88 154 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 HACE1Q8IYU2 909 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 RNPEPQ9H4A4 650 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 Q9H521 79 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 ASB7Q9H672 318 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 MINDY3Q9H8M7 445 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 HESX1Q9UBX0 185 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 CAPN8A6NHC0 703 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 ZBTB14O43829 449 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 HSPA4LO95757 839 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 CCDC130P13994 396 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 HSPA1LP34931 641 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 TMC7Q7Z402 723 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 PQLC1Q8N2U9 271 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 MARVELD2Q8N4S9 558 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 COLGALT1Q8NBJ5 622 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 DGCR14Q96DF8 476 aaKnown RBP18.01■□□□□ 0.47
SYNE3-202ENST00000553340 SLC4A5Q9BY07 1137 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 CDH19Q9H159 772 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 CLIC5Q9NZA1 410 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 DTLQ9NZJ0 730 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 ATXN10Q9UBB4 475 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 AP4E1Q9UPM8 1137 aa18.01■□□□□ 0.47
SYNE3-202ENST00000553340 E9PBE3 544 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 DENRO43583 198 aaKnown RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 ATP9BO43861 1147 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 KLHL41O60662 606 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 GP5P40197 560 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 RGS2P41220 211 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 TNFAIP2Q03169 654 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 USP4Q13107 963 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 SNAPC2Q13487 334 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 LY6KQ17RY6 165 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 PPP1R26Q5T8A7 1209 aaPredicted RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 TMEM110Q86TL2 294 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 FAM81AQ8TBF8 368 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 AFG1LQ8WV93 481 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 ARNTL2Q8WYA1 636 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 HIC2Q96JB3 615 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 CSPG4P5Q96PW8 444 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 FAM124BQ9H5Z6 455 aaPredicted RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 PIH1D1Q9NWS0 290 aaKnown RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 NR2E3Q9Y5X4 410 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 PGM3O95394 542 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 SNX16P57768 344 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 LARP7Q4G0J3 582 aaKnown RBP eCLIP18■□□□□ 0.47
SYNE3-202ENST00000553340 BSPRYQ5W0U4 402 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 EEPD1Q7L9B9 569 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 NMD3Q96D46 503 aaKnown RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 DCUN1D1Q96GG9 259 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 SERPINI1Q99574 410 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 MAN1C1Q9NR34 630 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 EIF2B3Q9NR50 452 aaKnown RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 PRMT7Q9NVM4 692 aaPredicted RBP18■□□□□ 0.47
SYNE3-202ENST00000553340 STK39Q9UEW8 545 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 ZNF112Q9UJU3 913 aa18■□□□□ 0.47
SYNE3-202ENST00000553340 HACD1B0YJ81 288 aa17.99■□□□□ 0.47
SYNE3-202ENST00000553340 PAPSS1O43252 624 aaPredicted RBP17.99■□□□□ 0.47
SYNE3-202ENST00000553340 ADCY6O43306 1168 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms