RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 XXYLT1Q8NBI6 393 aa11□□□□□ -0.65
VPS29-208ENST00000550267 LSM14AQ8ND56 463 aaKnown RBP11□□□□□ -0.65
VPS29-208ENST00000550267 OR2T3Q8NH03 318 aa11□□□□□ -0.65
VPS29-208ENST00000550267 FAM117AQ9C073 453 aa11□□□□□ -0.65
VPS29-208ENST00000550267 KDM4CQ9H3R0 1056 aa11□□□□□ -0.65
VPS29-208ENST00000550267 RASAL2Q9UJF2 1139 aa11□□□□□ -0.65
VPS29-208ENST00000550267 AK5Q9Y6K8 562 aa11□□□□□ -0.65
VPS29-208ENST00000550267 BPTFQ12830 3046 aa11□□□□□ -0.65
VPS29-208ENST00000550267 EIF3DO15371 548 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS29-208ENST00000550267 RRP8O43159 456 aaKnown RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 PAPSS1O43252 624 aaPredicted RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 TSPAN3O60637 253 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 VNN1O95497 513 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 SEMA4FO95754 770 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 CD27P26842 260 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 HNF1BP35680 557 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 CHKAP35790 457 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 CEBPZQ03701 1054 aaKnown RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 ARID5AQ03989 594 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 TARDBPQ13148 414 aaKnown RBP eCLIP10.99□□□□□ -0.65
VPS29-208ENST00000550267 DNAJC3Q13217 504 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 CAMK2GQ13555 558 aaPredicted RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 NCOA4Q13772 614 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 EIF4HQ15056 248 aaKnown RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 BMT2Q1RMZ1 405 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 PRAMEF14Q5SWL7 426 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 FAM173BQ6P4H8 233 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 PCSK4Q6UW60 755 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 PRICKLE2Q7Z3G6 844 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 ADAT2Q7Z6V5 191 aaKnown RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 CRYBG2Q8N1P7 616 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 ORAI3Q9BRQ5 295 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 BTBD1Q9H0C5 482 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 NAGPAQ9UK23 515 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 AGO1Q9UL18 857 aaKnown RBP10.99□□□□□ -0.65
VPS29-208ENST00000550267 ZNF510Q9Y2H8 683 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 PCDHGA1Q9Y5H4 931 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 PCDHA5Q9Y5H7 936 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 TMEM131Q92545 1883 aa10.99□□□□□ -0.65
VPS29-208ENST00000550267 A0A1B0GTQ1 180 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 VPS37CA5D8V6 355 aaPredicted RBP10.98□□□□□ -0.65
VPS29-208ENST00000550267 CAPN9O14815 690 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 RFPL3O75679 317 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 LDOC1O95751 146 aaPredicted RBP10.98□□□□□ -0.65
VPS29-208ENST00000550267 C4BPAP04003 597 aaKnown RBP10.98□□□□□ -0.65
VPS29-208ENST00000550267 CYBBP04839 570 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 GPC1P35052 558 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 RPS14P62263 151 aaKnown RBP10.98□□□□□ -0.65
VPS29-208ENST00000550267 CFHR1Q03591 330 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 EFEMP1Q12805 493 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 RABEP1Q15276 862 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 E2F5Q15329 346 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 FNDC3BQ53EP0 1204 aaKnown RBP10.98□□□□□ -0.65
VPS29-208ENST00000550267 FAM26FQ5R3K3 315 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 HES3Q5TGS1 186 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 GPR155Q7Z3F1 870 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 DENND1CQ8IV53 801 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 DDI1Q8WTU0 396 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 CYB5D2Q8WUJ1 264 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 CNDP2Q96KP4 475 aaKnown RBP10.98□□□□□ -0.65
VPS29-208ENST00000550267 TWNKQ96RR1 684 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 DCLK3Q9C098 648 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 TNMDQ9H2S6 317 aa10.98□□□□□ -0.65
VPS29-208ENST00000550267 URB1O60287 2271 aaKnown RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 TEX51A0A1B0GUA7 166 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 LRRIQ3A6PVS8 624 aaPredicted RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 J3QKU1 62 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 TIMM44O43615 452 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 EXOC3O60645 756 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 IGHV4-34P06331 123 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 RALAP11233 206 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 ACADVLP49748 655 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 KIF11P52732 1056 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 BCAT1P54687 386 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 C21orf59P57076 290 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 ASIC1P78348 528 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 COG7P83436 770 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 RTP5Q14D33 572 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 SHBQ15464 509 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 SPOPLQ6IQ16 392 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 FBXL19Q6PCT2 694 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 CCDC186Q7Z3E2 898 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 TADA2BQ86TJ2 420 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 UNC93AQ86WB7 457 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 ZNF276Q8N554 614 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 ZNF837Q96EG3 531 aaPredicted RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 CYFIP2Q96F07 1278 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 SLC6A18Q96N87 628 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 ELF4Q99607 663 aaPredicted RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 HNRNPABQ99729 332 aaKnown RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 ACE2Q9BYF1 805 aaPredicted RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 SLC2A11Q9BYW1 496 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 NRSN2Q9GZP1 204 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 TMEM245Q9H330 911 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 PNPLA8Q9NP80 782 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 ACACAQ13085 2346 aa10.97□□□□□ -0.65
VPS29-208ENST00000550267 HELZ2Q9BYK8 2649 aaKnown RBP10.97□□□□□ -0.65
VPS29-208ENST00000550267 COL5A1P20908 1838 aaPredicted RBP10.96□□□□□ -0.65
VPS29-208ENST00000550267 UBE4BO95155 1302 aa10.96□□□□□ -0.65
VPS29-208ENST00000550267 VILLO15195 856 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms