RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MTG2Q9H4K7 406 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 SLC39A2Q9NP94 309 aa13.31□□□□□ -0.28
SCAF11-208ENST00000546534 CAPN8A6NHC0 703 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 WNT9AO14904 365 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 DLDP09622 509 aaKnown RBP13.3□□□□□ -0.28
SCAF11-208ENST00000546534 CASP1P29466 404 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 GALCP54803 685 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 PDE4CQ08493 712 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 C8orf34Q49A92 452 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 PPP1R26Q5T8A7 1209 aaPredicted RBP13.3□□□□□ -0.28
SCAF11-208ENST00000546534 DMRTA1Q5VZB9 504 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 MBLAC2Q68D91 279 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 NCEH1Q6PIU2 408 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 SV2AQ7L0J3 742 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 KIAA0907Q7Z7F0 614 aaPredicted RBP13.3□□□□□ -0.28
SCAF11-208ENST00000546534 ERICH1Q86X53 443 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.3□□□□□ -0.28
SCAF11-208ENST00000546534 GANCQ8TET4 914 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 GOLGA1Q92805 767 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 SKA1Q96BD8 255 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 PLD4Q96BZ4 506 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 DHX58Q96C10 678 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 C7orf25Q9BPX7 421 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 PABPC3Q9H361 631 aaKnown RBP13.3□□□□□ -0.28
SCAF11-208ENST00000546534 AASDHPPTQ9NRN7 309 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 DMAC2Q9NW81 257 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 SERGEFQ9UGK8 458 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 GGA2Q9UJY4 613 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 NCKAP1Q9Y2A7 1128 aa13.3□□□□□ -0.28
SCAF11-208ENST00000546534 A0A1W2PR77 199 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 ERVH48-1M5A8F1 160 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 HLA-DRAP01903 254 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 NEFLP07196 543 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 PABPC1P11940 636 aaKnown RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 CD58P19256 250 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 GLDCP23378 1020 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 CD38P28907 300 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 EPHA8P29322 1005 aaPredicted RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 ACTN2P35609 894 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 PIK3CAP42336 1068 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 YWHAGP61981 247 aaKnown RBP eCLIP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 KCNH2Q12809 1159 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 BNIP3Q12983 259 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 KCNJ12Q14500 433 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 TRIP4Q15650 581 aaPredicted RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 TBC1D25Q3MII6 688 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 TAF1BQ53T94 588 aaPredicted RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 USP30Q70CQ3 517 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 AHI1Q8N157 1196 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 ARHGAP18Q8N392 663 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 TMA16Q96EY4 203 aaKnown RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 RSPH9Q9H1X1 276 aaPredicted RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 BLZF1Q9H2G9 400 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 APOBEC3GQ9HC16 384 aaKnown RBP13.29□□□□□ -0.28
SCAF11-208ENST00000546534 GDF3Q9NR23 364 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 FBXL12Q9NXK8 326 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 SUN2Q9UH99 717 aa13.29□□□□□ -0.28
SCAF11-208ENST00000546534 NAV2Q8IVL1 2488 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 PLXNA2O75051 1894 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 YKT6O15498 198 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 ATP5BP06576 529 aaKnown RBP13.28□□□□□ -0.28
SCAF11-208ENST00000546534 POLR2EP19388 210 aaKnown RBP13.28□□□□□ -0.28
SCAF11-208ENST00000546534 PDCP20941 246 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 ARRB1P49407 418 aaPredicted RBP13.28□□□□□ -0.28
SCAF11-208ENST00000546534 HARS2P49590 506 aaKnown RBP13.28□□□□□ -0.28
SCAF11-208ENST00000546534 RAB41Q5JT25 222 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 C1orf220Q5T0J3 134 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 SFMBT2Q5VUG0 894 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 FMNL3Q8IVF7 1028 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 CACTIN-AS1Q8N1I8 211 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 IQUBQ8NA54 791 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 GOLGA5Q8TBA6 731 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 WFDC5Q8TCV5 224 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 NAF1Q96HR8 494 aaKnown RBP13.28□□□□□ -0.28
SCAF11-208ENST00000546534 BACH2Q9BYV9 841 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 NEUROG2Q9H2A3 272 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 CYP3A43Q9HB55 503 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 STOML2Q9UJZ1 356 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 CLCA2Q9UQC9 943 aa13.28□□□□□ -0.28
SCAF11-208ENST00000546534 A0A1W2PP55 124 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 C10orf142B7Z368 130 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 MID1O15344 667 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 CKMT2P17540 419 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 SYT1P21579 422 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 CD70P32970 193 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 NASPP49321 788 aaPredicted RBP13.27□□□□□ -0.29
SCAF11-208ENST00000546534 SGSHP51688 502 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 NXPH1P58417 271 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 INSM1Q01101 510 aaPredicted RBP13.27□□□□□ -0.29
SCAF11-208ENST00000546534 ILKQ13418 452 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 PROX2Q3B8N5 592 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 ZNF394Q53GI3 561 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 KANSL1Q7Z3B3 1105 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 PIGZQ86VD9 579 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 SLC9A9Q8IVB4 645 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 DCBLD1Q8N8Z6 715 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 LINC00301Q8NCQ3 95 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 OR2T34Q8NGX1 318 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 RFFLQ8WZ73 363 aa13.27□□□□□ -0.29
SCAF11-208ENST00000546534 NDRG1Q92597 394 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms