RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 RAB6CQ9H0N0 254 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 ZFP14Q9HCL3 533 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 THG1LQ9NWX6 298 aaKnown RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 SMPD4Q9NXE4 827 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 AGO1Q9UL18 857 aaKnown RBP16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 NR2E1Q9Y466 385 aa16.54■□□□□ 0.24
PRPF40A-212ENST00000545856 DRGXA6NNA5 263 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 E9PAM4 449 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 I6L893 689 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 GFRA2O00451 464 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 MBTPS2O43462 519 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 ECI2O75521 394 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 LRIG2O94898 1065 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 MOCS2O96007 188 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 LAMP2P13473 410 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 RHOQP17081 205 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 TACR2P21452 398 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 TGM2P21980 687 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 NR2C2P49116 596 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 AUHQ13825 339 aaKnown RBP16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 FAM133BQ5BKY9 247 aaKnown RBP16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 FAM78AQ5JUQ0 283 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 CCDC181Q5TID7 509 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 DCAF12L1Q5VU92 463 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 SLC9A4Q6AI14 798 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 MFSD7Q6UXD7 560 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 RFX8Q6ZV50 586 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 DENND1CQ8IV53 801 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 HJURPQ8NCD3 748 aaPredicted RBP16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 MNS1Q8NEH6 495 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 ING5Q8WYH8 240 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 ZNF592Q92610 1267 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 CSPG4P5Q96PW8 444 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 RNF157Q96PX1 679 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 ZYG11BQ9C0D3 744 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 POMKQ9H5K3 350 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 GKN1Q9NS71 199 aa16.53■□□□□ 0.24
PRPF40A-212ENST00000545856 GOLGA6L10A0A0M3HER8 536 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 APOC4-APOC2K7ER74 178 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 NCAM2O15394 837 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 CEP104O60308 925 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 CLDN11O75508 207 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 PRAMEF12O95522 483 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 APOC2P02655 101 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 KLKB1P03952 638 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 HMBSP08397 361 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 KCNA5P22460 613 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 IL4RP24394 825 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 MAPKAPK2P49137 400 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 OXCT1P55809 520 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 FCHO2Q0JRZ9 810 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 DPYSQ14117 519 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 PDGFRLQ15198 375 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 SKIV2LQ15477 1246 aaKnown RBP16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 SMAD2Q15796 467 aaKnown RBP16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 CA9Q16790 459 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 ATP13A4Q4VNC1 1196 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 MPPE1Q53F39 396 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 ANKRD20A8PQ5CZ79 823 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 RNF43Q68DV7 783 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 ZNF572Q7Z3I7 529 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 SLC13A5Q86YT5 568 aaPredicted RBP16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 LRRC49Q8IUZ0 686 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 ZNF683Q8IZ20 524 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 BPIFB1Q8TDL5 484 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 ANLNQ9NQW6 1124 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 ARHGEF4Q9NR80 690 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 CWC15Q9P013 229 aaKnown RBP16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 MARK1Q9P0L2 795 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 MRFAP1Q9Y605 127 aa16.52■□□□□ 0.24
PRPF40A-212ENST00000545856 A0A1B0GVM2 712 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 TCAF2A6NFQ2 919 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CCDC188H7C350 402 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 NRG2O14511 850 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 DAPK3O43293 454 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 URI1O94763 535 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CYBBP04839 570 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 EPHB2P29323 1055 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 GBP2P32456 591 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CDH4P55283 916 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ZXDBP98169 803 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ZNF33AQ06730 810 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 KLF1Q13351 362 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 PAFAH1B3Q15102 231 aaKnown RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 AAK1Q2M2I8 961 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ZNF783Q6ZMS7 281 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CREG2Q8IUH2 290 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 MFSD6LQ8IWD5 586 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 RTL3Q8N8U3 475 aaKnown RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 TDRD5Q8NAT2 981 aaKnown RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 OSCP1Q8WVF1 389 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 RNF25Q96BH1 459 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ZSWIM3Q96MP5 696 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 RUNDC3BQ96NL0 473 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 APOL5Q9BWW9 433 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 PHF7Q9BWX1 381 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 BRD8Q9H0E9 1235 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 SIK2Q9H0K1 926 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 L2HGDHQ9H9P8 463 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 TMEM248Q9NWD8 314 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms