RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 TMEM86AQ8N2M4 240 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 AIFM3Q96NN9 605 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SPON2Q9BUD6 331 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CERS4Q9HA82 394 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 COL1A2P08123 1366 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 WWP2O00308 870 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 PLA2G6O60733 806 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SGPL1O95470 568 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CYP2A6P11509 494 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 MSH3P20585 1137 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DSG3P32926 999 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TLE2Q04725 743 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CDH18Q13634 790 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TSNQ15631 228 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 PSMD5Q16401 504 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM71Q2Q1W2 868 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 FAM98BQ52LJ0 330 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 RPRD1AQ96P16 312 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM51Q9BSJ1 452 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RNF112Q9ULX5 631 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 LRCH1Q9Y2L9 728 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 PCDHB3Q9Y5E6 796 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RIPK2O43353 540 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CYTH3O43739 400 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CYP1A2P05177 515 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 IL1R1P14778 569 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 KCNA5P22460 613 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 DRG2P55039 364 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 MRPS15P82914 257 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 CHRNB3Q05901 458 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 KCNA1Q09470 495 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 NCF4Q15080 339 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 NDUFA5Q16718 116 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SPATS1Q496A3 300 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 FAM46CQ5VWP2 391 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 P3H2Q8IVL5 708 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 HES6Q96HZ4 224 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SH3GL2Q99962 352 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 OMDQ99983 421 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 BDH2Q9BUT1 245 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SLC13A1Q9BZW2 595 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RAB6BQ9NRW1 208 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 BTBD7Q9P203 1132 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CRNNQ9UBG3 495 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 PXDNQ92626 1479 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 MED1Q15648 1581 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 ADH1CP00326 375 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 AKR1B1P15121 316 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CYP2A7P20853 494 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CDC25CP30307 473 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 GNL1P36915 607 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 POU4F1Q01851 419 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 LRRC8DQ7L1W4 858 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 GET4Q7L5D6 327 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 MINDY2Q8NBR6 621 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 AGR3Q8TD06 166 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 SETD7Q8WTS6 366 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 SLC5A5Q92911 643 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 RMND5BQ96G75 393 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 GTPBP2Q9BX10 602 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 KIAA1683Q9H0B3 1180 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 MAGEE1Q9HCI5 957 aa8□□□□□ -1.13
VPS13D-211ENST00000543710 CAMSAP3Q9P1Y5 1249 aaPredicted RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 TNPO3Q9Y5L0 923 aaKnown RBP8□□□□□ -1.13
VPS13D-211ENST00000543710 F8VZ95 297 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 SP100P23497 879 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ZCWPW2Q504Y3 356 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ZFP42Q96MM3 310 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 QRFPRQ96P65 431 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 PPP1R10Q96QC0 940 aaKnown RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 KCTD14Q9BQ13 255 aaPredicted RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 TMEM120AQ9BXJ8 343 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 FAM117AQ9C073 453 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 LMAN2LQ9H0V9 348 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 RIOX1Q9H6W3 641 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 AGO4Q9HCK5 861 aaKnown RBP7.99□□□□□ -1.13
VPS13D-211ENST00000543710 PCYOX1Q9UHG3 505 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 AGAP1Q9UPQ3 857 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CYP3A7-CYP3A51PA0A087WV96 503 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 TRAV19A0A0A6YYK7 116 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CCDC154A6NI56 674 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CYP3A7P24462 503 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 HPCAL1P37235 193 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 PRKCIP41743 596 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 MAPK8P45983 427 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 PRKCZQ05513 592 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ZBTB41Q5SVQ8 909 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CNKSR3Q6P9H4 555 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CHMP1BQ7LBR1 199 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 ATCAYQ86WG3 371 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 LEMD2Q8NC56 503 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 AKT1S1Q96B36 256 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CNDP1Q96KN2 507 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 CCDC90BQ9GZT6 254 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 NRDE2Q9H7Z3 1164 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 NCKIPSDQ9NZQ3 722 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 TMCC3Q9ULS5 477 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 AURKCQ9UQB9 309 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 KLHL20Q9Y2M5 609 aa7.99□□□□□ -1.13
VPS13D-211ENST00000543710 UBA6A0AVT1 1052 aaPredicted RBP7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms