RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TAC4Q86UU9 113 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 NTAN1Q96AB6 310 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 STAMBPL1Q96FJ0 436 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 AGAP3Q96P47 875 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 PGLYRP2Q96PD5 576 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 SLC17A6Q9P2U8 582 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 STARD13Q9Y3M8 1113 aa16.8■□□□□ 0.28
COL4A1-204ENST00000543140 B4GALT3O60512 393 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 AOC2O75106 756 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 KRT37O76014 449 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 SNRPAP09012 282 aaKnown RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 MGAT1P26572 445 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 SCAPQ12770 1279 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 MROH9Q5TGP6 573 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 OTOAQ7RTW8 1153 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 ZNF276Q8N554 614 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 PCSK9Q8NBP7 692 aaKnown RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 APOPT1Q96IL0 206 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 FERMT1Q9BQL6 677 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 TRPV6Q9H1D0 765 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 DMAP1Q9NPF5 467 aaPredicted RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 PCDHA11Q9Y5I1 949 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 MRPL42Q9Y6G3 142 aaKnown RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 RPLP2P05387 115 aaKnown RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 OR4Q2P0C623 313 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 TRIM71Q2Q1W2 868 aaKnown RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 CDHR3Q6ZTQ4 885 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 ZNF280BQ86YH2 543 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 PTPRN2Q92932 1015 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 TTC17Q96AE7 1141 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 SLC13A1Q9BZW2 595 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 PRDM16Q9HAZ2 1276 aa16.79■□□□□ 0.28
COL4A1-204ENST00000543140 KLHL8Q9P2G9 620 aaPredicted RBP16.79■□□□□ 0.28
COL4A1-204ENST00000543140 SDR42E2A6NKP2 422 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 M0QZQ0 153 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 USP12O75317 370 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 CYP11A1P05108 521 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 EPHB2P29323 1055 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 NEK3P51956 506 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 ACLYP53396 1101 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 AIF1P55008 147 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 SLC18A2Q05940 514 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 OVGP1Q12889 678 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 STKLD1Q8NE28 680 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 PGAP3Q96FM1 320 aaPredicted RBP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 OXNAD1Q96HP4 312 aaPredicted RBP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 PKMYT1Q99640 499 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 IL1RAPL1Q9NZN1 696 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 SF3B1O75533 1304 aaKnown RBP eCLIP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 COPEO14579 308 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 F9P00740 461 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 SRGAP2BP0DMP2 458 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 NEFHP12036 1026 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 HNRNPH1P31943 449 aaKnown RBP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 CXCR3P49682 368 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 PGFP49763 221 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 PARP6Q2NL67 630 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 PM20D1Q6GTS8 502 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 RTN4RL1Q86UN2 441 aaPredicted RBP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 SRPK1Q96SB4 655 aaKnown RBP16.78■□□□□ 0.28
COL4A1-204ENST00000543140 SIK2Q9H0K1 926 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 MANSC1Q9H8J5 431 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 RXFP1Q9HBX9 757 aa16.78■□□□□ 0.28
COL4A1-204ENST00000543140 FAM159BA6NKW6 160 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 DNAJC8O75937 253 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 LRIG2O94898 1065 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 PTPN3P26045 913 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 CST5P28325 142 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 CDK16Q00536 496 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 SP3Q02447 781 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 RNF43Q68DV7 783 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 LRRC8BQ6P9F7 803 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 CES3Q6UWW8 571 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 PDZD4Q76G19 769 aaPredicted RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 ZNF598Q86UK7 904 aaKnown RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 THEM5Q8N1Q8 247 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 ANKLE1Q8NAG6 615 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 DQX1Q8TE96 717 aaKnown RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 CELF6Q96J87 481 aaKnown RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 PLCD4Q9BRC7 762 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 IQCGQ9H095 443 aaKnown RBP16.77■□□□□ 0.28
COL4A1-204ENST00000543140 NPHS2Q9NP85 383 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 ZNF180Q9UJW8 692 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 NUDT5Q9UKK9 219 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 DSEQ9UL01 958 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 HMX2A2RU54 273 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 RASSF9O75901 435 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 GSTA1P08263 222 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 GSTA2P09210 222 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 CKBP12277 381 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 GRIK1P39086 918 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 ETV4P43268 484 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 TSPY1Q01534 308 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 GALNTL6Q49A17 601 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 LGSNQ5TDP6 509 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 DCLRE1AQ6PJP8 1040 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 RNF180Q86T96 592 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 SMC1BQ8NDV3 1235 aa16.77■□□□□ 0.28
COL4A1-204ENST00000543140 VPS11Q9H270 941 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms