RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 NCAM2O15394 837 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 IRAK2O43187 625 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 EPB41L2O43491 1005 aaKnown RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 USP12O75317 370 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 ACTL6BO94805 426 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 LARGE1O95461 756 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 GYS1P13807 737 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 NDUFS1P28331 727 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 EPHB2P29323 1055 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 AGTR2P50052 363 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 ARL4CP56559 192 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 AP2B1P63010 937 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 RNASELQ05823 741 aaKnown RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 DDX10Q13206 875 aaKnown RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 RPS6KA2Q15349 733 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 FAM110CQ1W6H9 321 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 AAK1Q2M2I8 961 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 BTBD16Q32M84 506 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 GLE1Q53GS7 698 aaKnown RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 TAF3Q5VWG9 929 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 ANO7Q6IWH7 933 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 WDR93Q6P2C0 686 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 C16orf89Q6UX73 402 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 KYAT3Q6YP21 454 aaKnown RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 RINLQ6ZS11 566 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 NEK8Q86SG6 692 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 CNGA4Q8IV77 575 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 UEVLDQ8IX04 471 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 GALNT16Q8N428 558 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 NAXEQ8NCW5 288 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 SRFBP1Q8NEF9 429 aaKnown RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 NPIPB3Q92617 1050 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 RUBCNQ92622 972 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 SKA1Q96BD8 255 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 MCRS1Q96EZ8 462 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 ZSCAN31Q96LW9 406 aaPredicted RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 SH2D3AQ9BRG2 576 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 SLC29A3Q9BZD2 475 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 MAGEH1Q9H213 219 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 PDCL3Q9H2J4 239 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 PDGFCQ9NRA1 345 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 ASNSD1Q9NWL6 643 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 RRN3Q9NYV6 651 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 SEMA5BQ9P283 1151 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 PDP2Q9P2J9 529 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 SIRT4Q9Y6E7 314 aaPredicted RBP3.64□□□□□ -1.83
USP28-210ENST00000542033 ZNF804BA4D1E1 1349 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 MYO15BQ96JP2 1530 aa3.64□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3DA0A087WVF3 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3IA0A087WXS9 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3EA0A087X179 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3KA0A087X1G2 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3BA6NDS4 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3FA6NER0 549 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3LB9A6J9 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 M0QZQ0 153 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 INPPL1O15357 1258 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 NKX2-8O15522 239 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 PPP6R2O75170 966 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 AGR2O95994 175 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3HP0C7X1 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 PRR35P0CG20 571 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 KELP23276 732 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 LMO1P25800 156 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 GRK5P34947 590 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 HOXD12P35452 270 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 GEMIN4P57678 1058 aaKnown RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 IRX3P78415 501 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 GHRHRQ02643 423 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 SF3A3Q12874 501 aaKnown RBP eCLIP3.63□□□□□ -1.83
USP28-210ENST00000542033 FOXD4Q12950 439 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 GAB1Q13480 694 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 SIM2Q14190 667 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 INTS11Q5TA45 600 aaKnown RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3GQ6DHY5 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 SULT6B1Q6IMI4 303 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3CQ6IPX1 549 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 SLC18B1Q6NT16 456 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 NFRKBQ6P4R8 1299 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 RAB11FIP2Q7L804 512 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 YTHDF3Q7Z739 585 aaKnown RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 SLC44A2Q8IWA5 706 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 TBC1D3Q8IZP1 549 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 SMG7Q92540 1137 aaKnown RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 PIGKQ92643 395 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 USP13Q92995 863 aaPredicted RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 UBXN10Q96LJ8 280 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 ELOVL1Q9BW60 279 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 ELAC1Q9H777 363 aaKnown RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 KCNK9Q9NPC2 374 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 LIN7CQ9NUP9 197 aaKnown RBP3.63□□□□□ -1.83
USP28-210ENST00000542033 KLHL13Q9P2N7 655 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 PI4KBQ9UBF8 816 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 GRHPRQ9UBQ7 328 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 CNTN6Q9UQ52 1028 aa3.63□□□□□ -1.83
USP28-210ENST00000542033 LOC105369274A0A096LPK9 316 aa3.62□□□□□ -1.83
USP28-210ENST00000542033 LOC102723532A0A0G2JNH3 316 aa3.62□□□□□ -1.83
USP28-210ENST00000542033 SMIM35A0A1B0GVV1 85 aa3.62□□□□□ -1.83
USP28-210ENST00000542033 DNAJC9-AS1A6NH13 148 aa3.62□□□□□ -1.83
USP28-210ENST00000542033 HMX3A6NHT5 357 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms