RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 STK38Q15208 465 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 TBC1D25Q3MII6 688 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 RAB41Q5JT25 222 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 ADGRF1Q5T601 910 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 PM20D1Q6GTS8 502 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 NCEH1Q6PIU2 408 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 ERICH1Q86X53 443 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 SPACA3Q8IXA5 215 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 LINC00301Q8NCQ3 95 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 RFFLQ8WZ73 363 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 HEXIM2Q96MH2 286 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 BACH2Q9BYV9 841 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 NEUROG2Q9H2A3 272 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 BLZF1Q9H2G9 400 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 ERVMER34-1Q9H9K5 563 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 MAGEF1Q9HAY2 307 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 APOBEC3GQ9HC16 384 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 CLCA2Q9UQC9 943 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 HBS1LQ9Y450 684 aaKnown RBP12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 PLXNA2O75051 1894 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 NAV2Q8IVL1 2488 aa12.12□□□□□ -0.47
CLSTN3-209ENST00000539982 ATMQ13315 3056 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 C10orf142B7Z368 130 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 TLR4O00206 839 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 WNT9AO14904 365 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 SPTLC2O15270 562 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 LATS1O95835 1130 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 SLFN14P0C7P3 912 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 CD58P19256 250 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 EPHA8P29322 1005 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 CASP1P29466 404 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 CCR5P51681 352 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 RHDQ02161 417 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 KCNH2Q12809 1159 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 CUL4AQ13619 759 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 KCNJ12Q14500 433 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 TAF1BQ53T94 588 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 SLC45A4Q5BKX6 768 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 C1orf220Q5T0J3 134 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 MPP7Q5T2T1 576 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 PIGZQ86VD9 579 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 FMNL3Q8IVF7 1028 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 DCBLD1Q8N8Z6 715 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 OR2T34Q8NGX1 318 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 IMPG2Q9BZV3 1241 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 MTG2Q9H4K7 406 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 ZSCAN16Q9H4T2 348 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 OLA1Q9NTK5 396 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 SERGEFQ9UGK8 458 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 ADAMTS1Q9UHI8 967 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 FZD4Q9ULV1 537 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 MYO18BQ8IUG5 2567 aa12.11□□□□□ -0.47
CLSTN3-209ENST00000539982 A0A1W2PP55 124 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 PDXKO00764 312 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 PPP6R2O75170 966 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 SIN3BO75182 1162 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 ZBED1O96006 694 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 NR3C1P04150 777 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 ACP1P24666 158 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 CD70P32970 193 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 TKTL1P51854 596 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 NXPH1P58417 271 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 ST8SIA6P61647 398 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 E2F1Q01094 437 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 INSM1Q01101 510 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 CST6Q15828 149 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 HNRNPA1L2Q32P51 320 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 ZNF394Q53GI3 561 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 SFMBT2Q5VUG0 894 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 SHC4Q6S5L8 630 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 OXR1Q8N573 874 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 ZNF248Q8NDW4 579 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 TTC17Q96AE7 1141 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 MYO19Q96H55 970 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 SERAC1Q96JX3 654 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 LGMNQ99538 433 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 OMDQ99983 421 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 IRX2Q9BZI1 471 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 NIF3L1Q9GZT8 377 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 SFMBT1Q9UHJ3 866 aa12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 TPX2Q9ULW0 747 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 TP53BP1Q12888 1972 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-209ENST00000539982 MID1O15344 667 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 POLR2DO15514 142 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 CUTAO60888 179 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 TBL1XO60907 577 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 RNASEH2AO75792 299 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 SLC8A1P32418 973 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 SGSHP51688 502 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 VAMP7P51809 220 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 UCNP55089 124 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 SLC8A3P57103 927 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 STK4Q13043 487 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 CUL4BQ13620 913 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 ARID5BQ14865 1188 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 PKDCCQ504Y2 493 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 C9orf64Q5T6V5 341 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 PIK3R6Q5UE93 754 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 BROXQ5VW32 411 aa12.09□□□□□ -0.47
CLSTN3-209ENST00000539982 CEP135Q66GS9 1140 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms