RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 MFAP3LO75121 409 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 LMO2P25791 158 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ASPAP45381 313 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 PPP3CCP48454 512 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ADKP55263 362 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ARID5AQ03989 594 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ASIC2Q16515 512 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 SOWAHAQ2M3V2 549 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 TMEM270Q6UE05 265 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 VSTM1Q6UX27 236 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 GPR155Q7Z3F1 870 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 TMPRSS12Q86WS5 348 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 CHPFQ8IZ52 775 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ADGRF2Q8IZF7 708 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 TOP6BLQ8N6T0 577 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 KAT5Q92993 513 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 WBP2Q969T9 261 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 JAKMIP2Q96AA8 810 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ARID3AQ99856 593 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 GPR174Q9BXC1 333 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 CLMPQ9H6B4 373 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 CRTAC1Q9NQ79 661 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 ITM2CQ9NQX7 267 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 SPHK2Q9NRA0 654 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 GMIPQ9P107 970 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 USP36Q9P275 1121 aaKnown RBP13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 MYO6Q9UM54 1294 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 SLCO1B1Q9Y6L6 691 aa13.07□□□□□ -0.32
CLSTN3-208ENST00000538933 UTP20O75691 2785 aaKnown RBP13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 A0A1B0GVT2 93 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 CAPN8A6NHC0 703 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 F8VZ95 297 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 TRIM66O15016 1216 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 ZBTB24O43167 697 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 GFPT2O94808 682 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 NCAM1P13591 858 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 FERP16591 822 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 BDNFP23560 247 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 SOX5P35711 763 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 LHX1P48742 406 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 GOLGA8FQ08AF8 430 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 GOLGA8DPQ0D2H9 430 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 TAF10Q12962 218 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 TBX2Q13207 712 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 PREPLQ4J6C6 727 aaPredicted RBP13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 DCAF12L1Q5VU92 463 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 LRRC69Q6ZNQ3 347 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 DPH6Q7L8W6 267 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 CCDC186Q7Z3E2 898 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 DDX42Q86XP3 938 aaKnown RBP eCLIP13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 BBS7Q8IWZ6 715 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 OR8K1Q8NGG5 319 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 MYLPFQ96A32 169 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 KREMEN1Q96MU8 473 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 TTYH3Q9C0H2 523 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 MIR1-1HGQ9H1L0 117 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 CISHQ9NSE2 258 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 TMEM30AQ9NV96 361 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 CKAP5Q14008 2032 aa13.06□□□□□ -0.32
CLSTN3-208ENST00000538933 MEI4A8MW99 385 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 A8MXQ7 604 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 MBL2P11226 248 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 PCSK1P29120 753 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 GNL1P36915 607 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 GRIK1P39086 918 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 CSNK1EP49674 416 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 CDH8P55286 799 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 BPIFB4P59827 614 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 SEMG2Q02383 582 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 PTK2Q05397 1052 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 SRSF1Q07955 248 aaKnown RBP eCLIP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 RTP5Q14D33 572 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 SUZ12Q15022 739 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 KIF19Q2TAC6 998 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 ZNF394Q53GI3 561 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 TDRD12Q587J7 1177 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 BTBD8Q5XKL5 378 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 SDE2Q6IQ49 451 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 C4orf50Q6ZRC1 276 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 NUDT18Q6ZVK8 323 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 RBBP8NLQ8NC74 664 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 SNIP1Q8TAD8 396 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 KBTBD7Q8WVZ9 684 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 BAP1Q92560 729 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 NXPE2Q96DL1 559 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 NAA15Q9BXJ9 866 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 MKRN2Q9H000 416 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 PDCL3Q9H2J4 239 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 DEF6Q9H4E7 631 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 ABHD10Q9NUJ1 306 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 EIF2B4Q9UI10 523 aaKnown RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 DNMT3LQ9UJW3 386 aa13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 AJAP1Q9UKB5 411 aaPredicted RBP13.05□□□□□ -0.32
CLSTN3-208ENST00000538933 PYCARD-AS1I3L0S3 204 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 FOXN3O00409 490 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 GFRA2O00451 464 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 COCHO43405 550 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 PCDHGA12O60330 932 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 GREM1O60565 184 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 TACC1O75410 805 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms