RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	LARGE1	O95461	756 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	ANXA6	P08133	673 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	ABCB4	P21439	1286 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TBXAS1	P24557	533 aa	Predicted RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	GRK5	P34947	590 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	STAT6	P42226	847 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	POLE2	P56282	527 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TLE3	Q04726	772 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	DMWD	Q09019	674 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	MTX1	Q13505	466 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	MORC3	Q14149	939 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TRIM71	Q2Q1W2	868 aa	Known RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	ATPAF1	Q5TC12	328 aa	Predicted RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	MSANTD2	Q6P1R3	559 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	SLC39A5	Q6ZMH5	540 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	CYB5R4	Q7L1T6	521 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TECPR1	Q7Z6L1	1165 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TFAP2D	Q7Z6R9	452 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TRABD2A	Q86V40	505 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	RFX6	Q8HWS3	928 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	MMP21	Q8N119	569 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	IPO4	Q8TEX9	1081 aa	Known RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	SLC22A17	Q8WUG5	538 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	NAF1	Q96HR8	494 aa	Known RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TMEM41A	Q96HV5	264 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	CLMN	Q96JQ2	1002 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	SGCZ	Q96LD1	299 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	GDF15	Q99988	308 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	ELOVL1	Q9BW60	279 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TMEM120A	Q9BXJ8	343 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	CCDC134	Q9H6E4	229 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TASP1	Q9H6P5	420 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	EPS8L2	Q9H6S3	715 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	SFXN1	Q9H9B4	322 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	MOV10	Q9HCE1	1003 aa	Known RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	ANAPC4	Q9UJX5	808 aa		3.16	□□□□□ -1.9
CD44-238	ENST00000534296	AGO2	Q9UKV8	859 aa	Known RBP	3.16	□□□□□ -1.9
CD44-238	ENST00000534296	TBC1D3D	A0A087WVF3	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3I	A0A087WXS9	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3E	A0A087X179	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3K	A0A087X1G2	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	IGLV5-39	A0A0G2JS06	123 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3B	A6NDS4	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	PLEKHD1	A6NEE1	506 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3F	A6NER0	549 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	GOLGA6L3	A6NEY3	463 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	EFCAB8	A8MWE9	144 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296		B4DGG1	531 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3L	B9A6J9	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	PIP5K1B	O14986	540 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	NKX2-8	O15522	239 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	FFAR2	O15552	330 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TAF5L	O75529	589 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	SKAP2	O75563	359 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	NFATC1	O95644	943 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	CRYAB	P02511	175 aa	Known RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	ITGA2B	P08514	1039 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3H	P0C7X1	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	PSG1	P11464	419 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	CIITA	P33076	1130 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	IDUA	P35475	653 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	PPM1A	P35813	382 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	SOX2	P48431	317 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	ZNF84	P51523	738 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TNFAIP2	Q03169	654 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	RNASEL	Q05823	741 aa	Known RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	HNRNPA0	Q13151	305 aa	Known RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	FHL1	Q13642	323 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	AAK1	Q2M2I8	961 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	GRAMD1B	Q3KR37	738 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3G	Q6DHY5	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3C	Q6IPX1	549 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	ERAP2	Q6P179	960 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	B4GALNT4	Q76KP1	1039 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	RHPN2	Q8IUC4	686 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TBC1D3	Q8IZP1	549 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	ZNF527	Q8NB42	609 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	CCT6B	Q92526	530 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	NPIPB3	Q92617	1050 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	RSC1A1	Q92681	617 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	GPR78	Q96P69	363 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	PAGR1	Q9BTK6	254 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	FAM234A	Q9H0X4	552 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	WDR26	Q9H7D7	661 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	AGO4	Q9HCK5	861 aa	Known RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	SEMA4B	Q9NPR2	832 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	TNFSF13B	Q9Y275	285 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	ZBTB1	Q9Y2K1	713 aa		3.15	□□□□□ -1.91
CD44-238	ENST00000534296	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	3.15	□□□□□ -1.91
CD44-238	ENST00000534296	C16orf96	A6NNT2	1141 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	RHOD	O00212	210 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	PCDH17	O14917	1159 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	NPHP1	O15259	732 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	PPP6R2	O75170	966 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	CNTN5	O94779	1100 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	CER1	O95813	267 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	ITGB6	P18564	788 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	STAT1	P42224	750 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	HTR3A	P46098	478 aa		3.14	□□□□□ -1.91
CD44-238	ENST00000534296	PCP4	P48539	62 aa		3.14	□□□□□ -1.91

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