RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 ZBTB44Q8NCP5 570 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 OR8K1Q8NGG5 319 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 FIBINQ8TAL6 211 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 ACDQ96AP0 544 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 LMLNQ96KR4 655 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 TKTL2Q9H0I9 626 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 ISCUQ9H1K1 167 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 ZSCAN32Q9NX65 697 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 STIM2Q9P246 746 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 MMP17Q9ULZ9 603 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 SLC8A2Q9UPR5 921 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 HS3ST4Q9Y661 456 aa20.56■□□□□ 0.88
CPSF1-209ENST00000532725 SGK1O00141 431 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 ADAM23O75077 832 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 KLF8O95600 359 aaPredicted RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 SDC4P31431 198 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 RDXP35241 583 aaKnown RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 NRLP54845 237 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 RPL7AP62424 266 aaKnown RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 ATP11AP98196 1134 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 DMWDQ09019 674 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 MAMLD1Q13495 774 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 AUHQ13825 339 aaKnown RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 DMC1Q14565 340 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 C15orf59Q2T9L4 293 aaPredicted RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 RAB6CQ53S08 254 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 TDRD12Q587J7 1177 aaKnown RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 TMEM215Q68D42 235 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 PLEKHA7Q6IQ23 1121 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 FBXL22Q6P050 247 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 DNAJC24Q6P3W2 148 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 CHSY1Q86X52 802 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 CAMKK1Q8N5S9 505 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 DDX51Q8N8A6 666 aaKnown RBP eCLIP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 ZNF513Q8N8E2 541 aaPredicted RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 TXNDC5Q8NBS9 432 aaKnown RBP20.55■□□□□ 0.88
CPSF1-209ENST00000532725 WFDC5Q8TCV5 224 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 C1orf74Q96LT6 269 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 PHOX2BQ99453 314 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 DNAJC7Q99615 494 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 TRIM5Q9C035 493 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 RAB6CQ9H0N0 254 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 ZDHHC4Q9NPG8 344 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 ARHGAP20Q9P2F6 1191 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 PAXBP1Q9Y5B6 917 aa20.55■□□□□ 0.88
CPSF1-209ENST00000532725 F5H5T6 163 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 TIMM44O43615 452 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 HNRNPLP14866 589 aaKnown RBP eCLIP20.54■□□□□ 0.88
CPSF1-209ENST00000532725 TBX2Q13207 712 aaPredicted RBP20.54■□□□□ 0.88
CPSF1-209ENST00000532725 CRY1Q16526 586 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 C5orf22Q49AR2 442 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 EGFLAMQ63HQ2 1017 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 TMEM92Q6UXU6 159 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 STRADAQ7RTN6 431 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 ANKS1BQ7Z6G8 1248 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 C14orf80Q86SX3 495 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 IGSF8Q969P0 613 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 ACOX2Q99424 681 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.54■□□□□ 0.88
CPSF1-209ENST00000532725 TMPRSS4Q9NRS4 437 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 ELOVL2Q9NXB9 296 aa20.54■□□□□ 0.88
CPSF1-209ENST00000532725 A0A087X0T9 212 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 PROB1E7EW31 1015 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 LILRB5O75023 590 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 FAM228BP0C875 321 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 GPD1P21695 349 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 ZNF143P52747 638 aaPredicted RBP20.53■□□□□ 0.88
CPSF1-209ENST00000532725 ARTNQ5T4W7 220 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 ADIPOR2Q86V24 386 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 FAM131BQ86XD5 332 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 HAPLN3Q96S86 360 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 SIK2Q9H0K1 926 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 ABCB8Q9NUT2 735 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 PARVAQ9NVD7 372 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 PCDHGA2Q9Y5H1 932 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 R4GN57 208 aa20.53■□□□□ 0.88
CPSF1-209ENST00000532725 TYW5A2RUC4 315 aaKnown RBP20.52■□□□□ 0.88
CPSF1-209ENST00000532725 LUC7L3O95232 432 aaKnown RBP20.52■□□□□ 0.88
CPSF1-209ENST00000532725 NTSR1P30989 418 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 CD70P32970 193 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 FNTBP49356 437 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 ADKP55263 362 aaKnown RBP20.52■□□□□ 0.88
CPSF1-209ENST00000532725 HDAC4P56524 1084 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 CDO1Q16878 200 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 FSCBQ5H9T9 825 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 EOGTQ5NDL2 527 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 TRMT11Q7Z4G4 463 aaKnown RBP20.52■□□□□ 0.88
CPSF1-209ENST00000532725 VPS36Q86VN1 386 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 MFN1Q8IWA4 741 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 ZNF683Q8IZ20 524 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 CARNMT1Q8N4J0 409 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 ZNF557Q8N988 423 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-209ENST00000532725 ATRIPQ8WXE1 791 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 MCEEQ96PE7 176 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 THAP10Q9P2Z0 257 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-209ENST00000532725 GGA2Q9UJY4 613 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 VANGL2Q9ULK5 521 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 SNX10Q9Y5X0 201 aa20.52■□□□□ 0.88
CPSF1-209ENST00000532725 CCDC163A0A0D9SF12 145 aa20.51■□□□□ 0.87
CPSF1-209ENST00000532725 DRGXA6NNA5 263 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms